Suppr超能文献

奥密克戎(B.1.1.529):传染性、疫苗突破感染及抗体耐药性。

Omicron (B.1.1.529): Infectivity, vaccine breakthrough, and antibody resistance.

作者信息

Chen Jiahui, Wang Rui, Gilby Nancy Benovich, Wei Guo-Wei

机构信息

Department of Mathematics, Michigan State University, MI 48824, USA.

Spartan Innovations, 325 East Grand River Ave., Suite 355, East Lansing, MI 48823 USA.

出版信息

ArXiv. 2021 Dec 1:arXiv:2112.01318v1.

Abstract

The latest severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variant Omicron (B.1.1.529) has ushered panic responses around the world due to its contagious and vaccine escape mutations. The essential infectivity and antibody resistance of the SARS-CoV-2 variant are determined by its mutations on the spike (S) protein receptor-binding domain (RBD). However, a complete experimental evaluation of Omicron might take weeks or even months. Here, we present a comprehensive quantitative analysis of Omicron's infectivity, vaccine-breakthrough, and antibody resistance. An artificial intelligence (AI) model, which has been trained with tens of thousands of experimental data points and extensively validated by experimental data on SARS-CoV-2, reveals that Omicron may be over ten times more contagious than the original virus or about twice as infectious as the Delta variant. Based on 132 three-dimensional (3D) structures of antibody-RBD complexes, we unveil that Omicron may be twice more likely to escape current vaccines than the Delta variant. The Food and Drug Administration (FDA)-approved monoclonal antibodies (mAbs) from Eli Lilly may be seriously compromised. Omicron may also diminish the efficacy of mAbs from Celltrion and Rockefeller University. However, its impact on Regeneron mAb cocktail appears to be mild.

摘要

最新的严重急性呼吸综合征冠状病毒2(SARS-CoV-2)变种奥密克戎(B.1.1.529)因其具有传染性和疫苗逃逸突变,在全球引发了恐慌反应。SARS-CoV-2变种的基本传染性和抗体抗性由其刺突(S)蛋白受体结合域(RBD)上的突变决定。然而,对奥密克戎进行全面的实验评估可能需要数周甚至数月时间。在此,我们对奥密克戎的传染性、疫苗突破和抗体抗性进行了全面的定量分析。一个人工智能(AI)模型,已通过数万个实验数据点进行训练,并经SARS-CoV-2实验数据广泛验证,结果显示奥密克戎的传染性可能比原始病毒高十多倍,或约为德尔塔变种的两倍。基于132个抗体-RBD复合物的三维(3D)结构,我们发现奥密克戎逃避当前疫苗的可能性可能是德尔塔变种的两倍。美国食品药品监督管理局(FDA)批准的礼来公司的单克隆抗体(mAbs)可能会受到严重影响。奥密克戎也可能降低Celltrion和洛克菲勒大学的单克隆抗体的效力。然而,它对再生元单克隆抗体鸡尾酒疗法的影响似乎较小。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7851/8647651/7912cbbe2a7e/nihpp-2112.01318v1-f0001.jpg

相似文献

2
Omicron Variant (B.1.1.529): Infectivity, Vaccine Breakthrough, and Antibody Resistance.
J Chem Inf Model. 2022 Jan 24;62(2):412-422. doi: 10.1021/acs.jcim.1c01451. Epub 2022 Jan 6.
6
A Bispecific Antibody Targeting RBD and S2 Potently Neutralizes SARS-CoV-2 Omicron and Other Variants of Concern.
J Virol. 2022 Aug 24;96(16):e0077522. doi: 10.1128/jvi.00775-22. Epub 2022 Aug 2.
8
Omicron BA.2 (B.1.1.529.2): high potential to becoming the next dominating variant.
Res Sq. 2022 Feb 23:rs.3.rs-1362445. doi: 10.21203/rs.3.rs-1362445/v1.
9
Omicron variant (B.1.1.529) of SARS-CoV-2: Mutation, infectivity, transmission, and vaccine resistance.
World J Clin Cases. 2022 Jan 7;10(1):1-11. doi: 10.12998/wjcc.v10.i1.1.
10
Revealing the Threat of Emerging SARS-CoV-2 Mutations to Antibody Therapies.
J Mol Biol. 2021 Sep 3;433(18):167155. doi: 10.1016/j.jmb.2021.167155. Epub 2021 Jul 14.

引用本文的文献

2
A deep learning model to predict dose distributions for breast cancer radiotherapy.
Discov Oncol. 2025 Feb 12;16(1):165. doi: 10.1007/s12672-025-01942-4.

本文引用的文献

1
Emerging Vaccine-Breakthrough SARS-CoV-2 Variants.
ACS Infect Dis. 2022 Mar 11;8(3):546-556. doi: 10.1021/acsinfecdis.1c00557. Epub 2022 Feb 8.
2
Mechanisms of SARS-CoV-2 Evolution Revealing Vaccine-Resistant Mutations in Europe and America.
J Phys Chem Lett. 2021 Dec 16;12(49):11850-11857. doi: 10.1021/acs.jpclett.1c03380. Epub 2021 Dec 7.
3
Furin cleavage of the SARS-CoV-2 spike is modulated by -glycosylation.
Proc Natl Acad Sci U S A. 2021 Nov 23;118(47). doi: 10.1073/pnas.2109905118.
4
Neutralizing antibody activity in convalescent sera from infection in humans with SARS-CoV-2 and variants of concern.
Nat Microbiol. 2021 Nov;6(11):1433-1442. doi: 10.1038/s41564-021-00974-0. Epub 2021 Oct 15.
5
Signatures in SARS-CoV-2 spike protein conferring escape to neutralizing antibodies.
PLoS Pathog. 2021 Aug 5;17(8):e1009772. doi: 10.1371/journal.ppat.1009772. eCollection 2021 Aug.
6
Revealing the Threat of Emerging SARS-CoV-2 Mutations to Antibody Therapies.
J Mol Biol. 2021 Sep 3;433(18):167155. doi: 10.1016/j.jmb.2021.167155. Epub 2021 Jul 14.
7
A topology-based network tree for the prediction of protein-protein binding affinity changes following mutation.
Nat Mach Intell. 2020;2(2):116-123. doi: 10.1038/s42256-020-0149-6. Epub 2020 Feb 14.
8
Prediction and mitigation of mutation threats to COVID-19 vaccines and antibody therapies.
Chem Sci. 2021 Apr 13;12(20):6929-6948. doi: 10.1039/d1sc01203g.
10
Transmission, infectivity, and neutralization of a spike L452R SARS-CoV-2 variant.
Cell. 2021 Jun 24;184(13):3426-3437.e8. doi: 10.1016/j.cell.2021.04.025. Epub 2021 Apr 20.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验