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基于 CORAL 的布鲁顿酪氨酸激酶抑制剂的蒙特卡罗全局定量构效关系建模:混合描述符方法。

CORAL: Monte Carlo based global QSAR modelling of Bruton tyrosine kinase inhibitors using hybrid descriptors.

机构信息

Department of Pharmaceutical Chemistry, Faculty of Pharmaceutical Chemistry, Tehran Medical Sciences, Islamic Azad University, Tehran, Iran.

Department of Chemistry, Payame Noor University (PNU), Tehran, Iran.

出版信息

SAR QSAR Environ Res. 2021 Dec;32(12):1013-1031. doi: 10.1080/1062936X.2021.2003429.

Abstract

Global QSAR modelling was performed to predict the pIC values of 233 diverse heterocyclic compounds as BTK inhibitors with the Monte Carlo algorithm of CORAL software using the DCW hybrid descriptors extracted from SMILES notations of molecules. The dataset of 233 BTK inhibitors was randomly split into training, invisible training, calibration and validation sets. The index of ideality of correlation was also applied to build and judge the predictability of the QSAR models. Eight global QSAR models based on the hybrid optimal descriptor using two target functions, i.e. TF (W = 0) and TF (W = 0.2) have been constructed. The statistical parameters of QSAR models computed by TF are more reliable and robust and were used to predict the pIC values. The model constructed for split 4 via TF is regarded as the best model and the numerical values of , , and are equal to 0.7981, 0.7429, 0.7898 and 0.6784, respectively. By internal and external validation techniques, the predictability and reliability of the designed models have been assessed. The structural attributes responsible for the increase and decrease of pIC of BTK inhibitors were also identified.

摘要

采用 CORAL 软件的蒙特卡罗算法,利用从分子 SMILES 符号中提取的 DCW 混合描述符,对 233 种不同杂环化合物作为 BTK 抑制剂的 pIC 值进行了全球定量构效关系建模,以预测其 pIC 值。将 233 种 BTK 抑制剂数据集随机分为训练集、隐形训练集、校准集和验证集。还应用了理想相关性指数来构建和判断 QSAR 模型的可预测性。基于混合最优描述符,使用两个目标函数(TF(W=0)和 TF(W=0.2))构建了 8 个全局 QSAR 模型。通过 TF 计算的 QSAR 模型的统计参数更可靠和稳健,并用于预测 pIC 值。通过 TF 构建的用于拆分 4 的模型被认为是最佳模型,其数值分别为 0.7981、0.7429、0.7898 和 0.6784。通过内部和外部验证技术,评估了设计模型的预测能力和可靠性。还确定了导致 BTK 抑制剂 pIC 增加和减少的结构属性。

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