Physics Department, North Carolina State University, Raleigh, NC27695, USA.
Center for Human Health and the Environment, North Carolina State University, Raleigh, NC 27695, USA.
Nucleic Acids Res. 2021 Dec 16;49(22):13000-13018. doi: 10.1093/nar/gkab1142.
The telomere specific shelterin complex, which includes TRF1, TRF2, RAP1, TIN2, TPP1 and POT1, prevents spurious recognition of telomeres as double-strand DNA breaks and regulates telomerase and DNA repair activities at telomeres. TIN2 is a key component of the shelterin complex that directly interacts with TRF1, TRF2 and TPP1. In vivo, the large majority of TRF1 and TRF2 are in complex with TIN2 but without TPP1 and POT1. Since knockdown of TIN2 also removes TRF1 and TRF2 from telomeres, previous cell-based assays only provide information on downstream effects after the loss of TRF1/TRF2 and TIN2. Here, we investigated DNA structures promoted by TRF2-TIN2 using single-molecule imaging platforms, including tracking of compaction of long mouse telomeric DNA using fluorescence imaging, atomic force microscopy (AFM) imaging of protein-DNA structures, and monitoring of DNA-DNA and DNA-RNA bridging using the DNA tightrope assay. These techniques enabled us to uncover previously unknown unique activities of TIN2. TIN2S and TIN2L isoforms facilitate TRF2-mediated telomeric DNA compaction (cis-interactions), dsDNA-dsDNA, dsDNA-ssDNA and dsDNA-ssRNA bridging (trans-interactions). Furthermore, TIN2 facilitates TRF2-mediated T-loop formation. We propose a molecular model in which TIN2 functions as an architectural protein to promote TRF2-mediated trans and cis higher-order nucleic acid structures at telomeres.
端粒特异性遮蔽复合物,包括 TRF1、TRF2、RAP1、TIN2、TPP1 和 POT1,可防止端粒被错误识别为双链 DNA 断裂,并调节端粒处的端粒酶和 DNA 修复活性。TIN2 是遮蔽复合物的关键组成部分,可直接与 TRF1、TRF2 和 TPP1 相互作用。在体内,绝大多数 TRF1 和 TRF2 与 TIN2 形成复合物,但不与 TPP1 和 POT1 形成复合物。由于 TIN2 的敲低也会将 TRF1 和 TRF2 从端粒上移除,因此之前基于细胞的检测仅提供了 TRF1/TRF2 和 TIN2 丢失后的下游效应的信息。在这里,我们使用单分子成像平台研究了 TRF2-TIN2 促进的 DNA 结构,包括使用荧光成像跟踪长的小鼠端粒 DNA 的压缩、使用原子力显微镜(AFM)成像蛋白质-DNA 结构,以及使用 DNA 紧绳检测监测 DNA-DNA 和 DNA-RNA 桥接。这些技术使我们能够揭示 TIN2 以前未知的独特活性。TIN2S 和 TIN2L 异构体促进 TRF2 介导的端粒 DNA 压缩(顺式相互作用)、dsDNA-dsDNA、dsDNA-ssDNA 和 dsDNA-ssRNA 桥接(反式相互作用)。此外,TIN2 促进 TRF2 介导的 T 环形成。我们提出了一个分子模型,其中 TIN2 作为一种结构蛋白,促进 TRF2 介导的端粒处的转和顺式高级核酸结构。
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