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sp. nov.,与昆虫病原线虫共生的共生细菌。

sp. nov., the symbiotic bacterium associated with the entomopathogenic nematode .

机构信息

Departamento de Sanidad Vegetal, Facultad de Ciencias Agronómicas, Universidad de Chile, Chile.

Programa de Doctorado en Ciencias Silvoagropecuarias y Veterinarias, Campus Sur Universidad de Chile, Santa Rosa 11315, La Pintana, Santiago, CP: 8820808, Chile.

出版信息

Int J Syst Evol Microbiol. 2021 Dec;71(12). doi: 10.1099/ijsem.0.005151.

Abstract

is a symbiotic group of bacteria associated with entomopathogenic nematodes of the family Steinernematidae. Although the described species list is extensive, not all their symbiotic bacteria have been identified. One single motile, Gram-negative and non-spore-forming rod-shaped symbiotic bacterium, strain VLS, was isolated from the entomopathogenic nematode . Analyses of the 16S rRNA gene determined that the VLS isolate belongs to the genus , and its closest related species is DSM 16338 (98.2 %). Deeper analyses using the whole genome for phylogenetic reconstruction indicate that VLS exhibits a unique clade in the genus. Genomic comparisons considering digital DNA-DNA hybridization (dDDH) values confirms this result, showing that the VLS values are distant enough from the 70 % threshold suggested for new species, sharing 30.7, 30.5 and 30.3 % dDDH with MCB, DSM 18168 and DSM 18168, respectively, as the closest species. Detailed physiological, biochemical and chemotaxonomic tests of the VLS isolate reveal consistent differences from previously described species. Phylogenetic, physiological, biochemical and chemotaxonomic approaches show that VLS represents a new species of the genus , for which the name sp. nov. (type strain VLS=CCCT 20.04=DSM 111583) is proposed.

摘要

是与嗜线虫致病杆菌科(Steinernematidae)的昆虫病原线虫共生的细菌群。尽管已描述的物种列表很广泛,但并非所有共生细菌都已被鉴定出来。从昆虫病原线虫中分离出一种单一的能动、革兰氏阴性且非孢子形成的杆状共生细菌,菌株 VLS。对 16S rRNA 基因的分析确定,VLS 分离株属于 属,与其最接近的相关物种是 DSM 16338(98.2%)。使用全基因组进行系统发育重建的更深入分析表明,VLS 在属中表现出独特的进化枝。考虑到数字 DNA-DNA 杂交(dDDH)值的基因组比较证实了这一结果,表明 VLS 值与 70%的新物种建议阈值足够远,与 MCB、DSM 18168 和 DSM 18168 的 dDDH 值分别为 30.7%、30.5%和 30.3%,分别为最接近的物种。对 VLS 分离株的详细生理、生化和化学分类测试显示与先前描述的 物种存在一致差异。系统发育、生理、生化和化学分类方法表明,VLS 代表 属的一个新物种,建议将其命名为 sp. nov.(模式菌株 VLS=CCCT 20.04=DSM 111583)。

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