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黄胡蜂属新种(Xenorhabdus thuongxuanensis sp. nov.)和埃波克黄胡蜂属新种(Xenorhabdus eapokensis sp. nov.),从斯氏线虫属中分离得到。

Xenorhabdus thuongxuanensis sp. nov. and Xenorhabdus eapokensis sp. nov., isolated from Steinernema species.

机构信息

Institut für Angewandte Mikrobiologie, Universität Giessen, Giessen, Germany.

Fachbereich Biowissenschaften, Merck Stiftungsprofessur für Molekulare Biotechnologie, Goethe-Universität Frankfurt, Frankfurt am Main, Germany.

出版信息

Int J Syst Evol Microbiol. 2017 May;67(5):1107-1114. doi: 10.1099/ijsem.0.001770. Epub 2017 May 30.

Abstract

Two slightly yellowish-pigmented, oxidase-negative, rod-shaped and Gram-stain-negative bacterial strains (30TX1T and DL20T), isolated from Steinernema sangi and Steinernema eapokense, respectively, during soil sampling in Vietnam were studied using a polyphasic taxonomic approach. Strain 30TX1T showed highest 16S rRNA gene sequence similarity to the type strain of Xenorhabdus ehlersii (98.9 %) and strain DL20T to that of Xenorhabdus ishibashii (98.7 %). Sequence similarities to all other Xenorhabdus species were lower (<98.4 %). The two strains shared 98 % 16S rRNA gene sequence similarity. Multilocus sequence analysis (MLSA) based on concatenated partial recA, dnaN, gltX, gyrB and infB gene sequences showed a clear distinction of strains 30TX1T and DL20T among each other and to the closest related type strains. DNA-DNA hybridizations between strain DL20T and the type strain of X. ishibashii resulted in a relatedness value of 53 %. Genome-to-genome-based comparisons gave average nucleotide identities of 93.6 % (reciprocal 93.5 %) for strain 30TX1T and X. ehlersii DSM 16337T, of 92.8 % (reciprocal 93 %) for strain DL20T and X. ishibashiiDSM 22670Tand of 93.0 % (reciprocal 93.2 %) for the two novel strains. The fatty acid profile of the strains consisted of the major fatty acids C14 : 0, C16 : 0, C17 : 0 cyclo, C16 : 1ω7c and/or iso-C15 : 0 2-OH, and C18 : 1ω7c. Genome-to-genome comparison and MLSA results together with the differential biochemical and chemotaxonomic properties showed that strains 30TX1T and DL20T represent novel Xenorhabdus species, for which the names Xenorhabdus thuongxuanensis sp. nov. (type strain 30TX1T=CCM 8727T=LMG 29916T) and Xenorhabdus eapokensis sp. nov. (type strain DL20T=CCM 8728T=LMG 29917T) are proposed, respectively.

摘要

两株略呈黄色、氧化酶阴性、杆状和革兰氏染色阴性的细菌菌株(30TX1T 和 DL20T),分别从 Steinernema sangi 和 Steinernema eapokense 中分离出来,在越南土壤采样期间进行了多相分类研究。菌株 30TX1T 与 Xenorhabdus ehlersii 的模式株的 16S rRNA 基因序列相似性最高(98.9%),而菌株 DL20T 与 Xenorhabdus ishibashii 的模式株的相似性最高(98.7%)。与所有其他 Xenorhabdus 种的序列相似性均低于(<98.4%)。两株菌的 16S rRNA 基因序列相似性为 98%。基于 recA、dnaN、gltX、gyrB 和 infB 基因序列的部分串联的多位点序列分析(MLSA)显示,菌株 30TX1T 和 DL20T 彼此之间以及与最接近的模式株之间存在明显的区别。菌株 DL20T 与 Xenorhabdus ishibashii 的模式株之间的 DNA-DNA 杂交产生了 53%的相关性值。基于基因组的比较给出了菌株 30TX1T 与 Xenorhabdus ehlersii DSM 16337T 的平均核苷酸同一性为 93.6%(相互为 93.5%),菌株 DL20T 与 Xenorhabdus ishibashii DSM 22670T 的平均核苷酸同一性为 92.8%(相互为 93%),两个新菌株之间的平均核苷酸同一性为 93.0%(相互为 93.2%)。菌株的脂肪酸图谱由主要脂肪酸 C14:0、C16:0、C17:0 cyclo、C16:1ω7c 和/或 iso-C15:0 2-OH 和 C18:1ω7c 组成。基因组到基因组的比较和 MLSA 结果以及差异生化和化学分类特征表明,菌株 30TX1T 和 DL20T 代表新的 Xenorhabdus 种,分别提议将其命名为 Xenorhabdus thuongxuanensis sp. nov.(模式株 30TX1T=CCM 8727T=LMG 29916T)和 Xenorhabdus eapokensis sp. nov.(模式株 DL20T=CCM 8728T=LMG 29917T)。

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