• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

由低尺度量子力学计算和机器学习辅助的计算与数据驱动分子材料设计

Computational and data driven molecular material design assisted by low scaling quantum mechanics calculations and machine learning.

作者信息

Li Wei, Ma Haibo, Li Shuhua, Ma Jing

机构信息

Key Laboratory of Mesoscopic Chemistry of Ministry of Education, Institute of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Nanjing University Nanjing 210023 China

Jiangsu Key Laboratory of Advanced Organic Materials, Jiangsu Key Laboratory of Vehicle Emissions Control, Nanjing University Nanjing 210023 China.

出版信息

Chem Sci. 2021 Nov 8;12(45):14987-15006. doi: 10.1039/d1sc02574k. eCollection 2021 Nov 24.

DOI:10.1039/d1sc02574k
PMID:34909141
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8612375/
Abstract

Electronic structure methods based on quantum mechanics (QM) are widely employed in the computational predictions of the molecular properties and optoelectronic properties of molecular materials. The computational costs of these QM methods, ranging from density functional theory (DFT) or time-dependent DFT (TDDFT) to wave-function theory (WFT), usually increase sharply with the system size, causing the curse of dimensionality and hindering the QM calculations for large sized systems such as long polymer oligomers and complex molecular aggregates. In such cases, in recent years low scaling QM methods and machine learning (ML) techniques have been adopted to reduce the computational costs and thus assist computational and data driven molecular material design. In this review, we illustrated low scaling ground-state and excited-state QM approaches and their applications to long oligomers, self-assembled supramolecular complexes, stimuli-responsive materials, mechanically interlocked molecules, and excited state processes in molecular aggregates. Variable electrostatic parameters were also introduced in the modified force fields with the polarization model. On the basis of QM computational or experimental datasets, several ML algorithms, including explainable models, deep learning, and on-line learning methods, have been employed to predict the molecular energies, forces, electronic structure properties, and optical or electrical properties of materials. It can be conceived that low scaling algorithms with periodic boundary conditions are expected to be further applicable to functional materials, perhaps in combination with machine learning to fast predict the lattice energy, crystal structures, and spectroscopic properties of periodic functional materials.

摘要

基于量子力学(QM)的电子结构方法被广泛应用于分子材料的分子性质和光电性质的计算预测。这些量子力学方法的计算成本,从密度泛函理论(DFT)或含时密度泛函理论(TDDFT)到波函数理论(WFT),通常会随着系统规模的增大而急剧增加,从而导致维度灾难,并阻碍对诸如长聚合物低聚物和复杂分子聚集体等大型系统的量子力学计算。在这种情况下,近年来人们采用了低标度量子力学方法和机器学习(ML)技术来降低计算成本,从而辅助计算和数据驱动的分子材料设计。在这篇综述中,我们阐述了低标度基态和激发态量子力学方法及其在长低聚物、自组装超分子复合物、刺激响应材料、机械互锁分子以及分子聚集体中的激发态过程中的应用。在修正的力场中还通过极化模型引入了可变静电参数。基于量子力学计算或实验数据集,已经采用了几种机器学习算法,包括可解释模型、深度学习和在线学习方法,来预测材料的分子能量、力、电子结构性质以及光学或电学性质。可以设想,具有周期性边界条件的低标度算法有望进一步应用于功能材料,或许与机器学习相结合以快速预测周期性功能材料的晶格能、晶体结构和光谱性质。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/63d8/8612375/acd7288b8538/d1sc02574k-p4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/63d8/8612375/6fdc5067852f/d1sc02574k-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/63d8/8612375/292859e0abe6/d1sc02574k-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/63d8/8612375/bf5a115a9013/d1sc02574k-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/63d8/8612375/b21e4b08254e/d1sc02574k-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/63d8/8612375/b167ebb7735d/d1sc02574k-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/63d8/8612375/77f013814452/d1sc02574k-f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/63d8/8612375/a1d7b8571ab4/d1sc02574k-f7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/63d8/8612375/5c0667f914d6/d1sc02574k-f8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/63d8/8612375/12f30a60b287/d1sc02574k-p1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/63d8/8612375/fdd8e421c09d/d1sc02574k-p2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/63d8/8612375/0fa500008bf3/d1sc02574k-p3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/63d8/8612375/acd7288b8538/d1sc02574k-p4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/63d8/8612375/6fdc5067852f/d1sc02574k-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/63d8/8612375/292859e0abe6/d1sc02574k-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/63d8/8612375/bf5a115a9013/d1sc02574k-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/63d8/8612375/b21e4b08254e/d1sc02574k-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/63d8/8612375/b167ebb7735d/d1sc02574k-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/63d8/8612375/77f013814452/d1sc02574k-f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/63d8/8612375/a1d7b8571ab4/d1sc02574k-f7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/63d8/8612375/5c0667f914d6/d1sc02574k-f8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/63d8/8612375/12f30a60b287/d1sc02574k-p1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/63d8/8612375/fdd8e421c09d/d1sc02574k-p2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/63d8/8612375/0fa500008bf3/d1sc02574k-p3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/63d8/8612375/acd7288b8538/d1sc02574k-p4.jpg

相似文献

1
Computational and data driven molecular material design assisted by low scaling quantum mechanics calculations and machine learning.由低尺度量子力学计算和机器学习辅助的计算与数据驱动分子材料设计
Chem Sci. 2021 Nov 8;12(45):14987-15006. doi: 10.1039/d1sc02574k. eCollection 2021 Nov 24.
2
Structures and Spectroscopic Properties of Large Molecules and Condensed-Phase Systems Predicted by Generalized Energy-Based Fragmentation Approach.基于广义能量的碎片化方法预测的大分子和凝聚相体系的结构与光谱性质
Acc Chem Res. 2021 Jan 5;54(1):169-181. doi: 10.1021/acs.accounts.0c00580. Epub 2020 Dec 22.
3
Fragment quantum mechanical calculation of proteins and its applications.蛋白质的碎量子力学计算及其应用。
Acc Chem Res. 2014 Sep 16;47(9):2748-57. doi: 10.1021/ar500077t. Epub 2014 May 22.
4
Proceedings of the Second Workshop on Theory meets Industry (Erwin-Schrödinger-Institute (ESI), Vienna, Austria, 12-14 June 2007).第二届理论与产业研讨会会议录(2007年6月12日至14日,奥地利维也纳埃尔温·薛定谔研究所)
J Phys Condens Matter. 2008 Feb 13;20(6):060301. doi: 10.1088/0953-8984/20/06/060301. Epub 2008 Jan 24.
5
Treating Polarization Effects in Charged and Polar Bio-Molecules Through Variable Electrostatic Parameters.通过可变静电参数处理带电和极性生物分子中的极化效应。
J Chem Theory Comput. 2023 Jan 2. doi: 10.1021/acs.jctc.2c01130.
6
Machine learning exciton dynamics.机器学习激子动力学。
Chem Sci. 2016 Aug 1;7(8):5139-5147. doi: 10.1039/c5sc04786b. Epub 2016 Apr 1.
7
Recent advances toward a general purpose linear-scaling quantum force field.通用线性标度量子力场的最新进展。
Acc Chem Res. 2014 Sep 16;47(9):2812-20. doi: 10.1021/ar500103g. Epub 2014 Jun 17.
8
Machine learning builds full-QM precision protein force fields in seconds.机器学习在数秒内构建全量子力学精度的蛋白质力场。
Brief Bioinform. 2021 Nov 5;22(6). doi: 10.1093/bib/bbab158.
9
Reaction path potential for complex systems derived from combined ab initio quantum mechanical and molecular mechanical calculations.结合从头算量子力学和分子力学计算得出的复杂体系的反应路径势能。
J Chem Phys. 2004 Jul 1;121(1):89-100. doi: 10.1063/1.1757436.
10
An Efficient Linear-Scaling Electrostatic Coupling for Treating Periodic Boundary Conditions in QM/MM Simulations.一种用于量子力学/分子力学(QM/MM)模拟中处理周期性边界条件的高效线性标度静电耦合方法。
J Chem Theory Comput. 2006 Sep;2(5):1370-8. doi: 10.1021/ct6001169.

引用本文的文献

1
From Apo to Ligand-Bound: Unraveling PPARγ-LBD Conformational Shifts via Advanced Molecular Dynamics.从脱辅基状态到配体结合状态:通过高级分子动力学解析PPARγ配体结合域的构象转变
ACS Omega. 2025 Feb 17;10(13):13303-13318. doi: 10.1021/acsomega.4c11128. eCollection 2025 Apr 8.
2
Confining He Atoms in Diverse Ice-Phases: Examining the Stability of He Hydrate Crystals through DFT Approaches.将氦原子限制在不同的冰相中:通过密度泛函理论方法研究氦水合物晶体的稳定性。
Molecules. 2023 Dec 1;28(23):7893. doi: 10.3390/molecules28237893.
3
Design, synthesis, and application of some two-dimensional materials.

本文引用的文献

1
Quantum dynamics simulation of intramolecular singlet fission in covalently linked tetracene dimer.共价连接的并四苯二聚体分子内单线态裂变的量子动力学模拟
J Chem Phys. 2021 Nov 21;155(19):194101. doi: 10.1063/5.0068292.
2
Chemically Self-Charging Aqueous Zinc-Organic Battery.化学自充电水系锌有机电池。
J Am Chem Soc. 2021 Sep 22;143(37):15369-15377. doi: 10.1021/jacs.1c06936. Epub 2021 Sep 7.
3
Generalized energy-based fragmentation approach for calculations of solvation energies of large systems.广义基于能量的碎裂方法用于计算大体系的溶剂化能。
一些二维材料的设计、合成与应用。
Chem Sci. 2023 May 5;14(20):5266-5290. doi: 10.1039/d3sc00487b. eCollection 2023 May 24.
4
A transfer learning approach for reaction discovery in small data situations using generative model.一种使用生成模型在小数据情况下进行反应发现的迁移学习方法。
iScience. 2022 Jun 22;25(7):104661. doi: 10.1016/j.isci.2022.104661. eCollection 2022 Jul 15.
Phys Chem Chem Phys. 2021 Sep 15;23(35):19394-19401. doi: 10.1039/d1cp02814f.
4
A general charge transport picture for organic semiconductors with nonlocal electron-phonon couplings.具有非局域电子-声子耦合的有机半导体的一般电荷传输图像。
Nat Commun. 2021 Jul 12;12(1):4260. doi: 10.1038/s41467-021-24520-y.
5
Simulation of Nonlinear Femtosecond Signals at Finite Temperature via a Thermo Field Dynamics-Tensor Train Method: General Theory and Application to Time- and Frequency-Resolved Fluorescence of the Fenna-Matthews-Olson Complex.基于热场动力学-张量列方法的有限温度下非线性飞秒信号模拟:一般理论及对费纳-马修斯-奥尔森复合物时间分辨和频率分辨荧光的应用
J Chem Theory Comput. 2021 Jul 13;17(7):4316-4331. doi: 10.1021/acs.jctc.1c00158. Epub 2021 Jun 2.
6
Simultaneous Optimization of Donor/Acceptor Pairs and Device Specifications for Nonfullerene Organic Solar Cells Using a QSPR Model with Morphological Descriptors.使用具有形态学描述符的QSPR模型同时优化非富勒烯有机太阳能电池的供体/受体对和器件规格
J Phys Chem Lett. 2021 May 27;12(20):4980-4986. doi: 10.1021/acs.jpclett.1c01099. Epub 2021 May 20.
7
Free-triplet generation with improved efficiency in tetracene oligomers through spatially separated triplet pair states.通过空间分离的三线态对态提高并四苯低聚物中的自由三线态生成效率。
Nat Chem. 2021 Jun;13(6):559-567. doi: 10.1038/s41557-021-00665-7. Epub 2021 Apr 8.
8
Machine Learning Force Fields.机器学习力场
Chem Rev. 2021 Aug 25;121(16):10142-10186. doi: 10.1021/acs.chemrev.0c01111. Epub 2021 Mar 11.
9
CP2K: An electronic structure and molecular dynamics software package - Quickstep: Efficient and accurate electronic structure calculations.CP2K:一个电子结构与分子动力学软件包 - Quickstep:高效且精确的电子结构计算
J Chem Phys. 2020 May 21;152(19):194103. doi: 10.1063/5.0007045.
10
Transferable Multilevel Attention Neural Network for Accurate Prediction of Quantum Chemistry Properties via Multitask Learning.基于多任务学习的可转移多层次注意力神经网络量子化学性质的精确预测。
J Chem Inf Model. 2021 Mar 22;61(3):1066-1082. doi: 10.1021/acs.jcim.0c01224. Epub 2021 Feb 25.