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在 中全基因组鉴定 MYB 基因家族及其在不同花色中的表达分析。

Genome-Wide Identification of the MYB Gene Family in and Its Expression Analysis in Different Flower Colors.

机构信息

Key Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization, College of Landscape Architecture, Fujian Agriculture and Forestry University, Fuzhou 350002, China.

出版信息

Int J Mol Sci. 2021 Dec 9;22(24):13245. doi: 10.3390/ijms222413245.

Abstract

MYB transcription factors of plants play important roles in flavonoid synthesis, aroma regulation, floral organ morphogenesis, and responses to biotic and abiotic stresses. is a perennial herbaceous plant belonging to Orchidaceae, with special flower colors and high ornamental value. In this study, a total of 136 CeMYB transcription factors were identified from the genome of , including 27 1R-MYBs, 102 R2R3-MYBs, 2 3R-MYBs, 2 4R-MYBs, and 3 atypical MYBs. Through phylogenetic analysis in combination with MYB in , 20 clusters were obtained, indicating that these CeMYBs may have a variety of biological functions. The 136 were distributed on 18 chromosomes, and the conserved domain analysis showed that they harbored typical amino acid sequence repeats. The motif prediction revealed that multiple conserved elements were mostly located in the N-terminal of CeMYBs, suggesting their functions to be relatively conserved. harbored introns ranging from 0 to 13 and contained a large number of stress- and hormone-responsive -acting elements in the promoter regions. The subcellular localization prediction demonstrated that most of CeMYBs were positioned in the nucleus. The analysis of the expression based on transcriptome data showed that , and of the S6 subfamily may be the key genes leading to flower color variation. The results lay a foundation for the study of MYB transcription factors of and provide valuable information for further investigations of the potential function of MYB genes in the process of anthocyanin biosynthesis.

摘要

植物 MYB 转录因子在类黄酮合成、香气调控、花器官形态发生以及生物和非生物胁迫响应中发挥重要作用。卡特兰是兰科的一种多年生草本植物,具有特殊的花色和较高的观赏价值。本研究从卡特兰基因组中鉴定出了 136 个 CeMYB 转录因子,包括 27 个 1R-MYBs、102 个 R2R3-MYBs、2 个 3R-MYBs、2 个 4R-MYBs 和 3 个典型 MYBs。通过与 中的 MYB 进行系统发育分析,共获得 20 个聚类,表明这些 CeMYBs 可能具有多种生物学功能。136 个 CeMYB 分布在 18 条染色体上,保守结构域分析表明它们具有典型的氨基酸序列重复。基序预测表明,多个保守元件主要位于 CeMYBs 的 N 端,表明其功能相对保守。卡特兰含有 0 到 13 个内含子,启动子区域含有大量与应激和激素反应相关的作用元件。亚细胞定位预测表明,大多数 CeMYBs 定位于细胞核。基于转录组数据的 表达分析表明,S6 亚家族的 和 可能是导致花色变化的关键基因。研究结果为卡特兰 MYB 转录因子的研究奠定了基础,并为进一步研究 MYB 基因在花色生物合成过程中的潜在功能提供了有价值的信息。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3f10/8706735/e4240038f8a6/ijms-22-13245-g001.jpg

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