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Genomic resources for rhesus macaques (Macaca mulatta).恒河猴(Macaca mulatta)基因组资源。
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2
The population genomics of rhesus macaques (Macaca mulatta) based on whole-genome sequences.基于全基因组序列的恒河猴(猕猴)群体基因组学
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BMC Genomics. 2019 Mar 6;20(1):176. doi: 10.1186/s12864-019-5559-7.
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Nonhuman primate models in the genomic era: a paradigm shift.基因组时代的非人灵长类动物模型:范式转变。
ILAR J. 2013;54(2):154-65. doi: 10.1093/ilar/ilt044.
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An initial genetic linkage map of the rhesus macaque (Macaca mulatta) genome using human microsatellite loci.利用人类微卫星基因座构建的恒河猴(猕猴)基因组初步遗传连锁图谱。
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Single nucleotide polymorphisms (SNPs) are highly conserved in rhesus (Macaca mulatta) and cynomolgus (Macaca fascicularis) macaques.单核苷酸多态性(SNPs)在恒河猴(猕猴)和食蟹猴中高度保守。
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Copy number variants and fixed duplications among 198 rhesus macaques (Macaca mulatta).198 只恒河猴(Macaca mulatta)中的拷贝数变异和固定重复。
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Age-Associated Pathology in Rhesus Macaques (Macaca mulatta).恒河猴(猕猴)的年龄相关病理学
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A large-scale SNP-based genomic admixture analysis of the captive rhesus macaque colony at the California National Primate Research Center.大规模基于 SNP 的加利福尼亚国家灵长类动物研究中心圈养食蟹猕猴群体基因组杂种分析。
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Isoswitching drives the aging process in human brains.异开关驱动人类大脑的衰老过程。
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Spontaneous, naturally occurring cancers in non-human primates as a translational model for cancer immunotherapy.非人类灵长类动物中自发的、自然发生的癌症作为癌症免疫疗法的转化模型。
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本文引用的文献

1
Tissue-specific transcriptional profiling of plasmacytoid dendritic cells reveals a hyperactivated state in chronic SIV infection.浆细胞样树突状细胞的组织特异性转录谱分析显示慢性 SIV 感染呈高度激活状态。
PLoS Pathog. 2021 Jun 28;17(6):e1009674. doi: 10.1371/journal.ppat.1009674. eCollection 2021 Jun.
2
Rapid Body-Wide Transcriptomic Turnover During Rhesus Macaque Perinatal Development.恒河猴围产期发育过程中全身转录组的快速更新
Front Physiol. 2021 Jun 10;12:690540. doi: 10.3389/fphys.2021.690540. eCollection 2021.
3
Comparative genomic analysis of sifakas () reveals selection for folivory and high heterozygosity despite endangered status.冕狐猴的比较基因组分析表明,尽管处于濒危状态,但它们在食叶性和高杂合性方面仍受到选择。
Sci Adv. 2021 Apr 23;7(17). doi: 10.1126/sciadv.abd2274. Print 2021 Apr.
4
Immunogenicity of clinically relevant SARS-CoV-2 vaccines in nonhuman primates and humans.临床相关的 SARS-CoV-2 疫苗在非人类灵长类动物和人类中的免疫原性。
Sci Adv. 2021 Mar 19;7(12). doi: 10.1126/sciadv.abe8065. Print 2021 Mar.
5
Rhesus and cynomolgus macaque immunoglobulin heavy-chain genotyping yields comprehensive databases of germline VDJ alleles.恒河猴和食蟹猴免疫球蛋白重链基因分型产生了全面的种系 VDJ 等位基因数据库。
Immunity. 2021 Feb 9;54(2):355-366.e4. doi: 10.1016/j.immuni.2020.12.018. Epub 2021 Jan 22.
6
Secondary contact and genomic admixture between rhesus and long-tailed macaques in the Indochina Peninsula.中印半岛的食蟹猕猴和长尾猕猴的次级接触和基因混合。
J Evol Biol. 2020 Sep;33(9):1164-1179. doi: 10.1111/jeb.13681. Epub 2020 Jul 31.
7
Developmental outcomes of early adverse care on amygdala functional connectivity in nonhuman primates.早期不良照护对非人灵长类动物杏仁核功能连接的发展结果。
Dev Psychopathol. 2020 Dec;32(5):1579-1596. doi: 10.1017/S0954579420001133.
8
Pedigree reconstruction and distant pairwise relatedness estimation from genome sequence data: A demonstration in a population of rhesus macaques (Macaca mulatta).从基因组序列数据中进行家系重建和远缘亲缘关系估计:恒河猴(Macaca mulatta)群体中的演示。
Mol Ecol Resour. 2021 May;21(4):1333-1346. doi: 10.1111/1755-0998.13317. Epub 2021 Jan 27.
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Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility.序列多样性分析提高恒河猴基因组的生物医学应用价值。
Science. 2020 Dec 18;370(6523). doi: 10.1126/science.abc6617.
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Nonhuman Primate Models to Explore Mechanisms Underlying Early-Life Temperamental Anxiety.探索早期气质焦虑相关机制的非人类灵长类动物模型。
Biol Psychiatry. 2021 Apr 1;89(7):659-671. doi: 10.1016/j.biopsych.2020.08.028. Epub 2020 Sep 12.

恒河猴(Macaca mulatta)基因组资源。

Genomic resources for rhesus macaques (Macaca mulatta).

机构信息

Department of Molecular and Human Genetics, Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston, TX, 77030, USA.

出版信息

Mamm Genome. 2022 Mar;33(1):91-99. doi: 10.1007/s00335-021-09922-z. Epub 2022 Jan 9.

DOI:10.1007/s00335-021-09922-z
PMID:34999909
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8742695/
Abstract

Rhesus macaques (Macaca mulatta) are among the most extensively studied of nonhuman primates. This species has been the subject of many investigations concerning basic primate biology and behavior, including studies of social organization, developmental psychology, physiology, endocrinology, and neurodevelopment. Rhesus macaques are also critically important as a nonhuman primate model of human health and disease, including use in studies of infectious diseases, metabolic diseases, aging, and drug or alcohol abuse. Current research addressing fundamental biological and/or applied biomedical questions benefits from various genetic and genomic analyses. As a result, the genome of rhesus macaques has been the subject of more study than most nonhuman primates. This paper briefly discusses a number of information resources that can provide interested researchers with access to genetic and genomic data describing the content of the rhesus macaque genome, available information regarding genetic variation within the species, results from studies of gene expression, and other aspects of genomic analysis. Specific online databases are discussed, including the US National Center for Biotechnology Information, the University of California Santa Cruz genome browser, Ensembl genome browser, the Macaque Genotype and Phenotype database (mGAP), Rhesusbase, and others.

摘要

恒河猴(Macaca mulatta)是最广泛研究的非人类灵长类动物之一。该物种已经成为许多关于基本灵长类生物学和行为的研究主题,包括社会组织、发展心理学、生理学、内分泌学和神经发育的研究。恒河猴作为人类健康和疾病的非人类灵长类模型也非常重要,包括在传染病、代谢疾病、衰老和药物或酒精滥用研究中的应用。当前解决基本生物学和/或应用生物医学问题的研究受益于各种遗传和基因组分析。因此,恒河猴的基因组比大多数非人类灵长类动物受到更多的研究。本文简要讨论了一些信息资源,这些资源可以为有兴趣的研究人员提供访问描述恒河猴基因组内容的遗传和基因组数据的途径,有关该物种内遗传变异的可用信息,基因表达研究的结果以及基因组分析的其他方面。讨论了特定的在线数据库,包括美国国家生物技术信息中心、加利福尼亚大学圣克鲁斯基因组浏览器、Ensembl 基因组浏览器、猕猴基因型和表型数据库(mGAP)、Rhesusbase 等。