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盐生梭梭草基因组草图组装与注释数据

Data on draft genome assembly and annotation of Haloxylon salicornicum Moq.

作者信息

Al Salameen Fadila, Habibi Nazima, Al Amad Sami, Al Doaij Bashayer

机构信息

Environment and Life Sciences Research Centre, Kuwait Institute for Scientific Research, Kuwait.

出版信息

Data Brief. 2021 Dec 16;40:107721. doi: 10.1016/j.dib.2021.107721. eCollection 2022 Feb.

DOI:10.1016/j.dib.2021.107721
PMID:35005129
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8717446/
Abstract

Moq. Bunge ex Boiss (Rimth) is one of the main structural elements in Eastern Arabian vegetation associations. The plant is utilized as a food source for domestic stock, stabilizes the soil surface besides providing suitable microclimates for exotic species. It is considered one of the most promising species for re-vegetation. community is under threat from overgrazing leading to a reduction in the percentage of distribution from 22.7% to 2.2% in Kuwait. Therefore, genome characterization of this important Kuwaiti plant is required to formulate strategies for its conservation. Here we report the draft of the genome, which was sequenced on an Illumina HiSeq 2500 platform. BUSCO assessment revealed 69% of the genome was to be complete. Overall, 12960 gene structures, 11280 protein-coding genes, 11309 mRNAs (protein-coding), 51265 exons and 48100 CDSs were predicted. Functional annotation was carried out by interproscan-5.29-68.0. A total of 7222 protein-coding sequences were, annotated out of 11309 by at least one ontology term. All these genes were associated with 11 major biological processes branched into 60 child processes.

摘要

莫克·邦吉(Rimth)是东阿拉伯植被群落的主要结构元素之一。这种植物被用作家畜的食物来源,除了为外来物种提供适宜的微气候外,还能稳定土壤表面。它被认为是最有前景的用于植被恢复的物种之一。该群落正受到过度放牧的威胁,导致其在科威特的分布百分比从22.7%降至2.2%。因此,需要对这种重要的科威特植物进行基因组特征分析,以制定其保护策略。在此,我们报告了该基因组草图,它是在Illumina HiSeq 2500平台上测序的。BUSCO评估显示该基因组69%是完整的。总体而言,预测了12960个基因结构、11280个蛋白质编码基因、11309个mRNA(蛋白质编码)、51265个外显子和48100个编码序列。功能注释通过interproscan - 5.29 - 68.0进行。在11309个蛋白质编码序列中,共有7222个至少被一个本体术语注释。所有这些基因与11个主要生物过程相关,这些主要生物过程又分支为60个子过程。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e101/8717446/dd71e561fdea/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e101/8717446/403e53936476/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e101/8717446/e89735dd7042/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e101/8717446/dd71e561fdea/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e101/8717446/403e53936476/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e101/8717446/e89735dd7042/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e101/8717446/dd71e561fdea/gr3.jpg

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本文引用的文献

1
Genetic diversity and population structure of Haloxylon salicornicum moq. in Kuwait by ISSR markers.利用 ISSR 标记研究科威特盐角草的遗传多样性和种群结构。
PLoS One. 2018 Nov 21;13(11):e0207369. doi: 10.1371/journal.pone.0207369. eCollection 2018.
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使用MAKER和MAKER-P进行基因组注释与整理。
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