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无规卷曲蛋白数据库。

Databases for intrinsically disordered proteins.

机构信息

Department of Biomedical Sciences, University of Padova, Padova, Italy.

出版信息

Acta Crystallogr D Struct Biol. 2022 Feb 1;78(Pt 2):144-151. doi: 10.1107/S2059798321012109. Epub 2022 Jan 21.

DOI:10.1107/S2059798321012109
PMID:35102880
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8805306/
Abstract

Intrinsically disordered regions (IDRs) lacking a fixed three-dimensional protein structure are widespread and play a central role in cell regulation. Only a small fraction of IDRs have been functionally characterized, with heterogeneous experimental evidence that is largely buried in the literature. Predictions of IDRs are still difficult to estimate and are poorly characterized. Here, an overview of the publicly available knowledge about IDRs is reported, including manually curated resources, deposition databases and prediction repositories. The types, scopes and availability of the various resources are analyzed, and their complementarity and overlap are highlighted. The volume of information included and the relevance to the field of structural biology are compared.

摘要

无固定三维蛋白质结构的无序区域 (IDR) 广泛存在,并在细胞调控中发挥核心作用。只有一小部分 IDR 的功能得到了表征,而大量的异质实验证据在文献中被埋没。IDR 的预测仍然难以估计,并且特征描述也很差。本文报告了关于 IDR 的公开知识概述,包括手动整理的资源、存储库和预测库。分析了各种资源的类型、范围和可用性,并强调了它们的互补性和重叠性。比较了所包含信息的数量和与结构生物学领域的相关性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c242/8805306/fa837fcd638f/d-78-00144-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c242/8805306/fa837fcd638f/d-78-00144-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c242/8805306/fa837fcd638f/d-78-00144-fig1.jpg

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Comput Struct Biotechnol J. 2021 Jun 29;19:3964-3977. doi: 10.1016/j.csbj.2021.06.042. eCollection 2021.
2
FLIPPER: Predicting and Characterizing Linear Interacting Peptides in the Protein Data Bank.FLIPPER:预测和描述蛋白质数据库中的线性相互作用肽。
J Mol Biol. 2021 Apr 30;433(9):166900. doi: 10.1016/j.jmb.2021.166900. Epub 2021 Feb 27.
3
MobiDB-lite 3.0: fast consensus annotation of intrinsic disorder flavors in proteins.
基于统计热力学的IQSEC2蛋白构象分析
Curr Res Struct Biol. 2024 Oct 3;8:100158. doi: 10.1016/j.crstbi.2024.100158. eCollection 2024.
4
StrIDR: a database of intrinsically disordered regions of proteins with experimentally resolved structures.StrIDR:一个具有实验解析结构的蛋白质内在无序区域数据库。
bioRxiv. 2024 Aug 26:2024.08.22.609111. doi: 10.1101/2024.08.22.609111.
5
VUS next in rare diseases? Deciphering genetic determinants of biomolecular condensation.VUS 在下一个罕见病领域吗?破解生物分子凝聚的遗传决定因素。
Orphanet J Rare Dis. 2024 Sep 6;19(1):327. doi: 10.1186/s13023-024-03307-6.
6
Advanced computational approaches to understand protein aggregation.用于理解蛋白质聚集的先进计算方法。
Biophys Rev (Melville). 2024 Apr 24;5(2):021302. doi: 10.1063/5.0180691. eCollection 2024 Jun.
7
DisProt in 2024: improving function annotation of intrinsically disordered proteins.2024 年的 DisProt:改善无序蛋白质的功能注释。
Nucleic Acids Res. 2024 Jan 5;52(D1):D434-D441. doi: 10.1093/nar/gkad928.
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Nucleic Acids Res. 2023 Jul 5;51(W1):W62-W69. doi: 10.1093/nar/gkad430.
MobiDB-lite 3.0:蛋白质内在无序特征的快速一致性注释
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