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通过 X 射线晶体学确定元素的氧化态。

Determining the oxidation state of elements by X-ray crystallography.

机构信息

Macromolecular Crystallography, Helmholtz-Zentrum Berlin, Albert-Einstein-Strasse 15, 12489 Berlin, Germany.

Department of Biology, Humboldt-Universität zu Berlin, 10099 Berlin, Germany.

出版信息

Acta Crystallogr D Struct Biol. 2022 Feb 1;78(Pt 2):238-247. doi: 10.1107/S2059798321013048. Epub 2022 Jan 24.

Abstract

Protein-mediated redox reactions play a critical role in many biological processes and often occur at centres that contain metal ions as cofactors. In order to understand the exact mechanisms behind these reactions it is important to not only characterize the three-dimensional structures of these proteins and their cofactors, but also to identify the oxidation states of the cofactors involved and to correlate this knowledge with structural information. The only suitable approach for this based on crystallographic measurements is spatially resolved anomalous dispersion (SpReAD) refinement, a method that has been used previously to determine the redox states of metals in iron-sulfur cluster-containing proteins. In this article, the feasibility of this approach for small, non-iron-sulfur redox centres is demonstrated by employing SpReAD analysis to characterize Sulfolobus tokodaii sulerythrin, a ruberythrin-like protein that contains a binuclear metal centre. Differences in oxidation states between the individual iron ions of the binuclear metal centre are revealed in sulerythrin crystals treated with HO. Furthermore, data collection at high X-ray doses leads to photoreduction of this metal centre, showing that careful control of the total absorbed dose is a prerequisite for successfully determining the oxidation state through SpReAD analysis.

摘要

蛋白质介导的氧化还原反应在许多生物过程中起着关键作用,并且经常发生在含有金属离子作为辅助因子的中心。为了了解这些反应的确切机制,不仅要描述这些蛋白质及其辅助因子的三维结构,还要确定所涉及的辅助因子的氧化态,并将这方面的知识与结构信息相关联。基于晶体学测量,唯一合适的方法是空间分辨异常分散(SpReAD)精修,该方法以前曾用于确定含铁硫簇蛋白中金属的氧化态。在本文中,通过采用 SpReAD 分析来表征包含双核金属中心的 Sulfolobus tokodaii sulerythrin(一种类似于 ruberythrin 的蛋白),证明了该方法在确定小型非铁硫氧化还原中心的氧化态方面的可行性。在 HO 处理的 sulerythrin 晶体中,揭示了双核金属中心中各个铁离子的氧化态差异。此外,在高 X 射线剂量下进行的数据收集导致该金属中心的光还原,表明通过 SpReAD 分析成功确定氧化态的前提是对总吸收剂量进行仔细控制。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bd3d/8805299/a0499516f622/d-78-00238-fig1.jpg

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