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循环miR-17作为肺腺癌有前景的诊断生物标志物:来自基因表达综合数据库的证据

Circulating miR-17 as a promising diagnostic biomarker for lung adenocarcinoma: evidence from the Gene Expression Omnibus.

作者信息

Jia Erna, Ren Na, Zhang Rongkui, Zhou Changyu, Xue Jinru

机构信息

Department of Gastroenterology, China-Japan Union Hospital of Jilin University, Changchun, China.

Department of Thoracic Surgery, China-Japan Union Hospital of Jilin University, Changchun, China.

出版信息

Transl Cancer Res. 2020 Sep;9(9):5544-5554. doi: 10.21037/tcr-19-3025.

Abstract

BACKGROUND

A definitive preoperative diagnosis of lung adenocarcinoma (LUAD) is a clinical challenge. Informative and blood-based microRNAs (miRNAs) may provide new insights on LUAD screening and detection but are limited by suboptimal accuracy.

METHODS

The raw expression levels of circulating miR-21, miR-155, miR-210, miR-126, miR-182, and miR-17 in LUAD cases and healthy controls from the Gene Expression Omnibus (GEO) database were obtained and analyzed to identify accurate diagnostic miRNAs biomarkers for LUAD detection. We applied a meta-analysis to determine the magnitude of statistically significant miRNAs in LUAD samples, based on estimation outcomes acquired by analyzing raw data. Furthermore, bioinformatics analysis was conducted to reveal the function of significant miRNAs in the comprehensive underlying mechanisms of LUAD biology.

RESULTS

A total of 5 raw microarray datasets, including 87 LUAD samples and 83 healthy controls, were eligible. Through our analysis, the primary outcome measure was that circulating miR-17 showed a favorable accuracy in diagnosing LUAD, and the overall pooled area under the curve (AUC) value was 0.79. Furthermore, a total of 85 predicted target genes were chosen, and 29 gene ontology (GO) items and 3 Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways showed a significant statistical difference, which demonstrated that the target genes are involved in the biological processes of LUAD. A protein-protein interaction (PPI) network analysis revealed 10 hub genes, namely , and , located in the center of the PPI network.

CONCLUSIONS

In conclusion, circulating miR-17 may be a quality diagnostic biomarker for LUAD screening, but confirmation by a large, rigorous clinical validation in a longitudinal setting is warranted.

摘要

背景

肺腺癌(LUAD)的术前明确诊断是一项临床挑战。信息丰富且基于血液的微小RNA(miRNA)可能为LUAD的筛查和检测提供新的见解,但受限于次优的准确性。

方法

从基因表达综合数据库(GEO)中获取并分析LUAD病例和健康对照中循环miR-21、miR-155、miR-210、miR-126、miR-182和miR-17的原始表达水平,以确定用于LUAD检测的准确诊断性miRNA生物标志物。基于通过分析原始数据获得的估计结果,我们应用荟萃分析来确定LUAD样本中具有统计学意义的miRNA的大小。此外,进行生物信息学分析以揭示重要miRNA在LUAD生物学综合潜在机制中的功能。

结果

共有5个原始微阵列数据集符合条件,包括87个LUAD样本和83个健康对照。通过我们的分析,主要结果指标是循环miR-17在诊断LUAD方面显示出良好的准确性,总体合并曲线下面积(AUC)值为0.79。此外,共选择了85个预测靶基因,29个基因本体(GO)条目和3条京都基因与基因组百科全书(KEGG)途径显示出显著的统计学差异,这表明靶基因参与了LUAD的生物学过程。蛋白质-蛋白质相互作用(PPI)网络分析揭示了10个枢纽基因,即 , , , , , , , , ,位于PPI网络的中心。

结论

总之,循环miR-17可能是用于LUAD筛查的优质诊断生物标志物,但需要在纵向环境中进行大规模、严格的临床验证来证实。

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