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从多组学角度剖析海夫利克极限的新见解。

Novel insights from a multiomics dissection of the Hayflick limit.

机构信息

Calico Life Sciences, LLC, South San Francisco, United States.

出版信息

Elife. 2022 Feb 4;11:e70283. doi: 10.7554/eLife.70283.

Abstract

The process wherein dividing cells exhaust proliferative capacity and enter into replicative senescence has become a prominent model for cellular aging in vitro. Despite decades of study, this cellular state is not fully understood in culture and even much less so during aging. Here, we revisit Leonard Hayflick's original observation of replicative senescence in WI-38 human lung fibroblasts equipped with a battery of modern techniques including RNA-seq, single-cell RNA-seq, proteomics, metabolomics, and ATAC-seq. We find evidence that the transition to a senescent state manifests early, increases gradually, and corresponds to a concomitant global increase in DNA accessibility in nucleolar and lamin associated domains. Furthermore, we demonstrate that senescent WI-38 cells acquire a striking resemblance to myofibroblasts in a process similar to the epithelial to mesenchymal transition (EMT) that is regulated by t YAP1/TEAD1 and TGF-β2. Lastly, we show that verteporfin inhibition of YAP1/TEAD1 activity in aged WI-38 cells robustly attenuates this gene expression program.

摘要

细胞分裂耗尽增殖能力并进入复制性衰老的过程已成为体外细胞衰老的突出模型。尽管已经进行了几十年的研究,但这种细胞状态在培养中并未得到充分理解,在衰老过程中更是如此。在这里,我们重新审视了 Leonard Hayflick 关于 WI-38 人肺成纤维细胞复制性衰老的原始观察结果,该细胞配备了一系列现代技术,包括 RNA-seq、单细胞 RNA-seq、蛋白质组学、代谢组学和 ATAC-seq。我们发现证据表明,向衰老状态的转变发生得很早,逐渐增加,并与核仁相关和层粘连蛋白相关区域中 DNA 可及性的伴随性全局增加相对应。此外,我们证明衰老的 WI-38 细胞获得了与成肌纤维细胞惊人相似的特征,这一过程类似于上皮细胞到间充质转化 (EMT),受 t YAP1/TEAD1 和 TGF-β2 调节。最后,我们表明,verteporfin 抑制 YAP1/TEAD1 在老年 WI-38 细胞中的活性可显著减弱该基因表达程序。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d51c/8933007/10f767d1ad66/elife-70283-fig1.jpg

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