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黄尾鰤的染色体水平基因组组装()。 (注:原文括号部分内容缺失,翻译可能不完全准确)

A Chromosome-Level Genome Assembly of Yellowtail Kingfish ().

作者信息

Li Shuo, Liu Kaiqiang, Cui Aijun, Hao Xiancai, Wang Bin, Wang Hong-Yan, Jiang Yan, Wang Qian, Feng Bo, Xu Yongjiang, Shao Changwei, Liu Xuezhou

机构信息

Key Laboratory of Sustainable Development of Marine Fisheries, Ministry of Agriculture and Rural Affairs, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, China.

Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China.

出版信息

Front Genet. 2022 Jan 19;12:825742. doi: 10.3389/fgene.2021.825742. eCollection 2021.

Abstract

Yellowtail kingfish () is a pelagic marine piscivore with a circumglobal distribution. It is particularly suitable for open ocean aquaculture owing to its large body size, fast swimming, rapid growth, and high economic value. A high-precision genome is of great significance for future genetic breeding research and large-scale aquaculture in the open ocean. PacBio, Illumina, and Hi-C data were combined to assemble chromosome-level reference genome with the size of 648.34 Mb (contig N50: 28.52 Mb). 175 contigs was anchored onto 24 chromosomes with lengths ranging from 12.28 to 34.59 Mb, and 99.79% of the whole genome sequence was covered. The BUSCOs of genome and gene were 94.20 and 95.70%, respectively. Gene families associated with adaptive behaviors, such as olfactory receptors and HSP70 gene families, expanded in the genome of . An analysis of selection pressure revealed 652 fast-evolving genes, among which , , , and may be related to rapid growth traits. The data generated in this study provide a valuable resource for understanding the genetic basis of traits.

摘要

黄尾鰤()是一种分布于全球的远洋海洋食鱼动物。由于其体型大、游泳速度快、生长迅速且经济价值高,特别适合进行远洋水产养殖。高精度基因组对于未来的遗传育种研究和大规模远洋水产养殖具有重要意义。结合PacBio、Illumina和Hi-C数据组装了大小为648.34 Mb(重叠群N50:28.52 Mb)的染色体水平参考基因组。175个重叠群被锚定到24条染色体上,长度从12.28到34.59 Mb不等,覆盖了全基因组序列的99.79%。基因组和基因的BUSCO分别为94.20%和95.70%。与适应性行为相关的基因家族,如嗅觉受体和HSP70基因家族,在的基因组中有所扩展。选择压力分析揭示了652个快速进化基因,其中、、和可能与快速生长性状有关。本研究产生的数据为理解性状的遗传基础提供了宝贵资源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2178/8807568/e68756d7174a/fgene-12-825742-g001.jpg

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