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泛癌分析中酰基辅酶A合成酶长链家族成员4的基因改变、预后及免疫作用

Genetic Alteration, Prognostic and Immunological Role of Acyl-CoA Synthetase Long-Chain Family Member 4 in a Pan-Cancer Analysis.

作者信息

Yu Yongsheng, Sun Xuepu, Chen Fei, Liu Miao

机构信息

Department of General Surgery, The Fourth Affiliated Hospital of Harbin Medical University, Harbin, China.

Department of General Surgery, The First Affiliated Hospital of Harbin Medical University, Harbin, China.

出版信息

Front Genet. 2022 Jan 20;13:812674. doi: 10.3389/fgene.2022.812674. eCollection 2022.

Abstract

Acyl-CoA Synthetase long-chain family member 4 (ACSL4) is a member of acyl-CoA synthetase protein long-chain family, which is associated with amino acid synthesis, lipid synthesis and lipid peroxidation dependent iron death. However, the role of ACSL4 in generalized carcinoma remains unclear. We aim to analyze the expression and prognostic value of ACSL4 in pan-cancer, and further explore the correlation between ACSL4 and immune infiltration. Through ONCOMINE, TIMER (Tumor Immune Estimation Resource), GEPIA (Gene expression Profiling Interactive), UALCAN and HPA, ACSL4 expression patterns of in pan-cancer were analyzed. The prognostic value of ACSL4 was analyzed using PrognoScan and Kaplan-Meier Plotter databases. Furthermore, gene variation and epigenetic modification of ACSL4 were analyzed by cBioPortal and GSCA databases. Meanwhile, GEPIA and TIMER databases applied to evaluate the relationship between ACSL4 expression and immune infiltration. These results indicate that ACSL4 expression is down-regulated and associated with prognosis in most tumors. In general, lower ACSL4 expression shows more beneficial prognosis. The most common genetic alteration of ACSL4 is point mutation. ACSL4 is negatively correlated with DNA methylation levels in most cancers. ACSL4 mutations or hypomethylation are associated with poor prognosis. In addition, ACSL4 is positively correlated with immune infiltration in cancers. ACSL4 and immune infiltration are strongly associated with prognosis in BRCA (Breast invasive carcinoma) and SKCM (Skin Cutaneous Melanoma). ACSL4 mutation caused significant changes of immune infiltration in UCEC (Uterine Corpus Endometrial Carcinoma) and SARC (Sarcoma). ACSL4 may be a promising prognostic biomarker for pan-cancer and is closely associated with immune infiltration in the tumor microenvironment.

摘要

酰基辅酶A合成酶长链家族成员4(ACSL4)是酰基辅酶A合成酶蛋白质长链家族的成员,与氨基酸合成、脂质合成和脂质过氧化依赖性铁死亡相关。然而,ACSL4在广义癌症中的作用仍不清楚。我们旨在分析ACSL4在泛癌中的表达及预后价值,并进一步探讨ACSL4与免疫浸润之间的相关性。通过ONCOMINE、TIMER(肿瘤免疫评估资源)、GEPIA(基因表达谱交互式分析)、UALCAN和HPA分析了泛癌中ACSL4的表达模式。使用PrognoScan和Kaplan-Meier Plotter数据库分析了ACSL4的预后价值。此外,通过cBioPortal和GSCA数据库分析了ACSL4的基因变异和表观遗传修饰。同时,应用GEPIA和TIMER数据库评估ACSL4表达与免疫浸润之间的关系。这些结果表明,ACSL4表达在大多数肿瘤中下调并与预后相关。一般来说,ACSL4表达较低显示出更有利的预后。ACSL4最常见的基因改变是点突变。在大多数癌症中,ACSL4与DNA甲基化水平呈负相关。ACSL4突变或低甲基化与预后不良相关。此外,ACSL4在癌症中与免疫浸润呈正相关。在BRCA(乳腺浸润性癌)和SKCM(皮肤黑色素瘤)中,ACSL4和免疫浸润与预后密切相关。ACSL4突变在UCEC(子宫内膜癌)和SARC(肉瘤)中引起免疫浸润的显著变化。ACSL4可能是一种有前景的泛癌预后生物标志物,并且与肿瘤微环境中的免疫浸润密切相关。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/923e/8811308/5d7caeb30ee8/fgene-13-812674-g001.jpg

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