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法医昆虫学的特征基因谱和功能基因参考:Aldrichina grahami(双翅目:Calliphoridae)的基因组和发育转录组分析。

Characterized Gene Repertoires and Functional Gene Reference for Forensic Entomology: Genomic and Developmental Transcriptomic Analysis of Aldrichina grahami (Diptera: Calliphoridae).

机构信息

School of Basic Medicine, Central South University, Changsha, China.

Key Laboratory for Conserving Wildlife with Small Populations in Yunnan, Faculty of Biodiversity Conservation, Southwest Forestry University, Kunming, China.

出版信息

J Med Entomol. 2022 May 11;59(3):810-819. doi: 10.1093/jme/tjac004.

Abstract

Many flies of Diptera are common entomological evidence employed in forensic investigation. Exploring the existence of inter- and intra-species genomic differences of forensically relevant insects is of great importance. Aldrichina grahami is a common blow fly species of forensic importance. The present study characterized the gene repertoires of A. grahami, and provides insights into issues related to forensic entomology, such as necrophagous behavior, gene family features, and developmental patterns. Gene families were clustered and classified according to their function in different aspects of the necrophagous lifestyle, generating several gene repertoires. The genes under positive selection pressure and evolutionary changes were screen and identified. Moreover, genes that exhibited potential prediction value in the post mortem interval (PMI) estimation and development of immature stages were subjected to analysis based on the developmental transcriptome. Related insect species were compared at the genomic level to reveal the genes associated with necrophagous behaviors. The expression of selected genes in separated repositories was verified using qPCR. This work was conducted using a high-quality chromosome-level genome assembly of A. grahami and its developmental transcriptome. The findings will facilitate future research on A. grahami and the other forensically important species.

摘要

许多双翅目蝇类是法医学中常用的昆虫学证据。探索法医学相关昆虫种间和种内基因组差异的存在具有重要意义。Aldrichina grahami 是一种具有法医学重要性的常见麻蝇。本研究对 A. grahami 的基因库进行了特征描述,为法医昆虫学相关问题提供了深入了解,如食腐行为、基因家族特征和发育模式。根据其在食腐生活方式的不同方面的功能,对基因家族进行聚类和分类,生成了几个基因库。筛选和鉴定了受到正选择压力和进化变化影响的基因。此外,根据发育转录组分析了在死后间隔(PMI)估计和未成熟阶段发育中表现出潜在预测价值的基因。在基因组水平上比较了相关昆虫物种,以揭示与食腐行为相关的基因。使用 qPCR 验证了分离库中选定基因的表达。这项工作是使用 A. grahami 的高质量染色体水平基因组组装及其发育转录组进行的。研究结果将有助于未来对 A. grahami 及其他具有法医学重要性的物种的研究。

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