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HOFE:一个交互式法医昆虫学数据库。

HOFE: an interactive forensic entomological database.

机构信息

School of Basic Medical Sciences, Central South University, Changsha, Hunan 410013, China.

Department of Forensic Medicine, Key Laboratory of Forensic Medicine, School of Basic Medical Sciences, Xinjiang Medical University, Urumqi, Xinjiang 830017, China.

出版信息

Database (Oxford). 2024 Jul 13;2024. doi: 10.1093/database/baae058.

Abstract

The significance of entomological evidence in inferring the time, location and cause of death has been demonstrated both theoretically and practically. With the advancement of sequencing technologies, reports have emerged on necrophagous insects' nuclear genomes, transcriptomes, proteomes and mitochondrial genomes. However, within the field of forensic entomology, there is currently no available database that can integrate, store and share the resources of necrophagous insects. The absence of a database poses an inconvenience to the application of entomological evidence in judicial practice and hampers the development of the forensic entomology discipline. Given this, we have developed the Home Of Forensic Entomology database, encompassing 10 core functional modules: Home, Browse, Mitochondria, Proteome, JBrowse, Search, BLAST, Tools, Case base and Maps. Notably, the 'Tools' module enables multiple sequence alignment analysis (Muscle), homologous protein prediction (Genewise), primer design (Primer), large-scale genomic analysis (Lastz), Gene Ontology and Kyoto Encyclopedia of Genes and Genomes enrichment analysis, as well as expression profiling (PCA Analysis, Hcluster and Correlation Heatmap). In addition, the present database also works as an interactive platform for researchers by sharing forensic entomological case reports and uploading data and material. This database provides potential visitors with a comprehensive function for multi-omics data analysis, offers substantial references to researchers and criminal scene investigators and facilitates the utilization of entomological evidence in court. Database URL: http://ihofe.com/.

摘要

昆虫学证据在推断死亡时间、地点和原因方面的意义已经在理论和实践上得到了证明。随着测序技术的进步,有关腐食性昆虫核基因组、转录组、蛋白质组和线粒体基因组的报道已经出现。然而,在法医昆虫学领域,目前还没有一个可用的数据库可以整合、存储和共享腐食性昆虫的资源。数据库的缺失给昆虫学证据在司法实践中的应用带来了不便,也阻碍了法医昆虫学学科的发展。有鉴于此,我们开发了法医昆虫学之家数据库,包含 10 个核心功能模块:主页、浏览、线粒体、蛋白质组、JBrowse、搜索、BLAST、工具、案例库和地图。值得注意的是,“工具”模块可以进行多序列比对分析(Muscle)、同源蛋白预测(Genewise)、引物设计(Primer)、大规模基因组分析(Lastz)、基因本体论和京都基因与基因组百科全书富集分析,以及表达谱分析(PCA 分析、Hcluster 和相关热图)。此外,本数据库还作为一个交互式平台,供研究人员共享法医昆虫学案例报告和上传数据和材料。该数据库为潜在访问者提供了一个用于多组学数据分析的综合功能,为研究人员和犯罪现场调查人员提供了大量参考,并促进了昆虫学证据在法庭上的应用。数据库网址:http://ihofe.com/。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/080f/11245407/70ff6fc70f58/baae058f1.jpg

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