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可编程RNA编辑与修饰的基础和前景

The Basis and Promise of Programmable RNA Editing and Modification.

作者信息

Lo Nicholas, Xu Xin, Soares Fraser, He Housheng Hansen

机构信息

Princess Margaret Cancer Center, University Health Network, Toronto, ON, Canada.

Department of Medical Biophysics, University of Toronto, Toronto, ON, Canada.

出版信息

Front Genet. 2022 Jan 28;13:834413. doi: 10.3389/fgene.2022.834413. eCollection 2022.

Abstract

One key advantage of RNA over genomic editing is its temporary effects. Aside from current use of DNA-targeting CRISPR-Cas9, the more recently discovered CRISPR-Cas13 has been explored as a means of editing due to its RNA-targeting capabilities. Specifically, there has been a recent interest in identifying and functionally characterizing biochemical RNA modifications, which has spurred a new field of research known as "epitranscriptomics". As one of the most frequently occurring transcriptome modifications, N6-methyladenosine (m6A) has generated much interest. The presence of m6A modifications is under the tight control of a series of regulators, and the ability of fusing these proteins or demethylases to catalytically inactive CRISPR proteins have resulted in a new wave of programmable RNA methylation tools. In addition, studies have been conducted to develop different CRISPR/Cas and base editor systems capable of more efficient editing, and some have explored the effects of editing for certain diseases. As well, the application of CRISPR and base editors for screening shows promise in revealing the phenotypic outcomes from m6A modification, many of which are linked to physiological, and pathological effects. Thus, the therapeutic potential of CRISPR/Cas and base editors for not only m6A related, but other RNA and DNA related disease has also garnered insight. In this review, we summarize/discuss the recent findings on RNA editing with CRISPR, base editors and non-CRISPR related tools and offer a perspective regarding future applications for basic and clinical research.

摘要

与基因组编辑相比,RNA的一个关键优势在于其作用具有暂时性。除了目前使用的靶向DNA的CRISPR-Cas9外,最近发现的CRISPR-Cas13因其靶向RNA的能力而被探索作为一种编辑手段。具体而言,最近人们对鉴定和功能表征生化RNA修饰产生了兴趣,这催生了一个被称为“表观转录组学”的新研究领域。作为最常见的转录组修饰之一,N6-甲基腺苷(m6A)引起了广泛关注。m6A修饰的存在受到一系列调控因子的严格控制,将这些蛋白或去甲基化酶与催化失活的CRISPR蛋白融合的能力催生了新一代可编程RNA甲基化工具。此外,人们还开展了研究以开发能够更高效编辑的不同CRISPR/Cas和碱基编辑器系统,并且一些研究探讨了编辑对某些疾病的影响。同样,CRISPR和碱基编辑器在筛选中的应用有望揭示m6A修饰的表型结果,其中许多与生理和病理效应相关。因此,CRISPR/Cas和碱基编辑器不仅对与m6A相关的疾病,而且对其他与RNA和DNA相关的疾病的治疗潜力也得到了深入了解。在这篇综述中,我们总结/讨论了关于使用CRISPR、碱基编辑器和非CRISPR相关工具进行RNA编辑的最新发现,并对基础研究和临床研究的未来应用提出了展望。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d14d/8831800/26a6a3644da3/fgene-13-834413-g001.jpg

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