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DNA 能否帮助追踪穿山甲的地方贸易?来自达荷美缺口(西非)的白腹穿山甲的保护遗传学研究。

Can DNA help trace the local trade of pangolins? Conservation genetics of white-bellied pangolins from the Dahomey Gap (West Africa).

机构信息

Laboratory of Applied Ecology, Faculty of Agronomic Sciences, University of Abomey-Calavi, 01 BP 526, Cotonou, Benin.

Laboratoire Evolution et Diversité Biologique (EDB), CNRS/UPS/IRD, Université Toulouse III Paul Sabatier - Bâtiment 4R1, 118 route de Narbonne, 31062, Toulouse cedex 9, France.

出版信息

BMC Ecol Evol. 2022 Feb 14;22(1):16. doi: 10.1186/s12862-022-01971-5.

DOI:10.1186/s12862-022-01971-5
PMID:35164675
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8842964/
Abstract

BACKGROUND

African pangolins are currently experiencing unprecedented levels of harvesting, feeding both local demands and the illegal international trade. So far, the lack of knowledge on the population genetics of African pangolins has hampered any attempts at assessing their demographic status and tracing their trade at the local scale. We conducted a pioneer study on the genetic tracing of the African pangolin trade in the Dahomey Gap (DG). We sequenced and genotyped 189 white-bellied pangolins from 18 forests and 12 wildlife markets using one mitochondrial fragment and 20 microsatellite loci.

RESULTS

Tree-based assignment procedure showed that the pangolin trade is endemic to the DG region, as it was strictly fed by the the Dahomey Gap lineage (DGL). DGL populations were characterized by low levels of genetic diversity, an overall absence of equilibrium, important inbreeding levels, and lack of geographic structure. We identified a 92-98% decline in DGL effective population size 200-500 ya-concomitant with major political transformations along the 'Slave Coast'-leading to contemporaneous estimates being inferior to minimum viable population size (< 500). Genetic tracing suggested that wildlife markets from the DG sourced pangolins through the entire DGL range. Our loci provided the necessary power to distinguish among all the genotyped pangolins, tracing the dispatch of a same individual on the markets and within local communities. We developed an approach combining rarefaction analysis of private allele frequencies with cross-validation of observed data that traced five traded pangolins to their forest origin, c. 200-300 km away from the markets.

CONCLUSIONS

Although the genetic toolkit that we designed from traditional markers can prove helpful to trace the illegal trade in pangolins, our tracing ability was limited by the lack of population structure within the DGL. Given the deleterious combination of genetic, demographic, and trade-related factors affecting DGL populations, the conservation status of white-bellied pangolins in the DG should be urgently re-evaluated.

摘要

背景

非洲穿山甲目前正经历着前所未有的大规模捕猎,这些穿山甲不仅满足了当地的需求,也为非法的国际交易提供了货源。到目前为止,由于缺乏对非洲穿山甲种群遗传学的了解,任何评估其种群现状和追查其在当地贸易情况的尝试都受到了阻碍。我们在达荷美缺口(DG)进行了一项关于非洲穿山甲贸易遗传追踪的开创性研究。我们使用一个线粒体片段和 20 个微卫星位点,对来自 18 个森林和 12 个野生动物市场的 189 只白腹穿山甲进行了测序和基因分型。

结果

基于树的分配程序表明,穿山甲贸易是 DG 地区特有的,因为它严格依赖于达荷美缺口谱系(DGL)。DGL 种群的遗传多样性水平较低,总体上处于不平衡状态,存在严重的近亲繁殖现象,而且没有地理结构。我们发现,DGL 的有效种群数量在 200-500 年前下降了 92-98%,这与沿“奴隶海岸”发生的重大政治变革同时发生,导致同时期的估计值低于最小可行种群数量(<500)。遗传追踪表明,DG 的野生动物市场通过整个 DGL 范围获取穿山甲。我们的位点提供了必要的能力来区分所有基因分型的穿山甲,追踪同一个个体在市场和当地社区之间的流动。我们开发了一种方法,将稀有等位基因频率的稀疏分析与观察数据的交叉验证相结合,追踪了 5 只交易的穿山甲回到其森林起源地,距离市场约 200-300 公里。

结论

虽然我们从传统标记物设计的遗传工具包可以帮助追踪穿山甲的非法贸易,但我们的追踪能力受到 DGL 内部缺乏种群结构的限制。考虑到影响 DGL 种群的遗传、人口和贸易相关因素的不利组合,DG 地区白腹穿山甲的保护状况应紧急重新评估。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ae31/8842964/ecb0766de5c2/12862_2022_1971_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ae31/8842964/af132f1e2949/12862_2022_1971_Fig1_HTML.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ae31/8842964/28b4a435a0da/12862_2022_1971_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ae31/8842964/ecb0766de5c2/12862_2022_1971_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ae31/8842964/af132f1e2949/12862_2022_1971_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ae31/8842964/19a3f005577d/12862_2022_1971_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ae31/8842964/414984e49840/12862_2022_1971_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ae31/8842964/6873dc38db52/12862_2022_1971_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ae31/8842964/28b4a435a0da/12862_2022_1971_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ae31/8842964/ecb0766de5c2/12862_2022_1971_Fig6_HTML.jpg

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