• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

野黄瓜(Cucumis melo subsp. agrestis)的质体基因组数据分析

Plastome data analysis of Cucumis melo subsp.agrestis.

作者信息

Ajmal Ali Mohammad, Al-Anazi Khalid Mashay, Ansari Waquar Akhtar, Lee Joongku

机构信息

Department of Botany and Microbiology, College of Science, King Saud University, Riyadh-11451, Saudi Arabia.

Genetics Laboratory,Department of Zoology, College of Science, King Saud University, Riyadh-11451, Saudi Arabia.

出版信息

Bioinformation. 2021 Jun 30;17(6):646-651. doi: 10.6026/97320630017646. eCollection 2021.

DOI:10.6026/97320630017646
PMID:35173387
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8819795/
Abstract

It is of interest to refine the taxonomic status of C. melo ssp. agrestis using its plastome data. The chloroplast size and GC% was found to be 1,56,016 bp and 36.92% respectively in Cucumis melo subsp. agrestis. The plastome of C. melo subsp. agrestis comprises of two inverted repeat (IR) regions of 25,797 bp each. It consisted of 133 genes with 88 protein-coding genes, 8 rRNA genes and 37 tRNA genes. Analysis of the C. melo ssp. agrestis plastome data will help breeders to improve the yield the crop.

摘要

利用甜瓜野生变种的质体基因组数据来完善其分类地位很有意义。在甜瓜野生变种中,发现叶绿体大小为156,016碱基对,GC含量分别为36.92%。甜瓜野生变种的质体基因组由两个各为25,797碱基对的反向重复(IR)区域组成。它由133个基因组成,包括88个蛋白质编码基因、8个rRNA基因和37个tRNA基因。对甜瓜野生变种质体基因组数据的分析将有助于育种者提高作物产量。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cdd2/8819795/0b32f4d5acd6/97320630017646F5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cdd2/8819795/76fd6505820b/97320630017646F1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cdd2/8819795/c2f7488b177e/97320630017646F2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cdd2/8819795/efd4888cbc32/97320630017646F3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cdd2/8819795/bf209c0937c1/97320630017646F4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cdd2/8819795/0b32f4d5acd6/97320630017646F5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cdd2/8819795/76fd6505820b/97320630017646F1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cdd2/8819795/c2f7488b177e/97320630017646F2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cdd2/8819795/efd4888cbc32/97320630017646F3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cdd2/8819795/bf209c0937c1/97320630017646F4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cdd2/8819795/0b32f4d5acd6/97320630017646F5.jpg

相似文献

1
Plastome data analysis of Cucumis melo subsp.agrestis.野黄瓜(Cucumis melo subsp. agrestis)的质体基因组数据分析
Bioinformation. 2021 Jun 30;17(6):646-651. doi: 10.6026/97320630017646. eCollection 2021.
2
The complete chloroplast genome sequences of nine melon varieties ( L.): lights into comparative analysis and phylogenetic relationships.九个甜瓜品种(L.)的完整叶绿体基因组序列:进行比较分析和系统发育关系研究。
Front Genet. 2024 Jul 9;15:1417266. doi: 10.3389/fgene.2024.1417266. eCollection 2024.
3
Characterization of the complete chloroplast genome of L. var. Naud.柳叶菜变种瑙德的完整叶绿体基因组特征分析
Mitochondrial DNA B Resour. 2020 Jul 11;5(3):2744-2745. doi: 10.1080/23802359.2020.1788431.
4
Genetic Mapping and Nucleotide Diversity of Two Powdery Mildew Resistance Loci in Melon ().甜瓜白粉病抗性基因位点的遗传作图和核苷酸多态性()。
Phytopathology. 2020 Dec;110(12):1970-1979. doi: 10.1094/PHYTO-03-20-0078-R. Epub 2020 Oct 21.
5
Complete chloroplast genome sequence of 'Field Muskmelon,' an invasive weed to China.“野甜瓜”的完整叶绿体基因组序列,一种入侵中国的杂草。
Mitochondrial DNA B Resour. 2021 Nov 11;6(12):3352-3353. doi: 10.1080/23802359.2021.1994888. eCollection 2021.
6
Cucumis melo ssp. Agrestis var. Agrestis Ameliorates High Fat Diet Induced Dyslipidemia in Syrian Golden Hamsters and Inhibits Adipogenesis in 3T3-L1 Adipocytes.野甜瓜亚种野甜瓜改善叙利亚金仓鼠高脂饮食诱导的血脂异常并抑制3T3-L1脂肪细胞的脂肪生成。
Pharmacogn Mag. 2015 Oct;11(Suppl 4):S501-10. doi: 10.4103/0973-1296.172945.
7
Resequencing of 297 melon accessions reveals the genomic history of improvement and loci related to fruit traits in melon.对 297 份甜瓜种质资源进行重测序,揭示了甜瓜改良的基因组历史及与果实性状相关的基因座。
Plant Biotechnol J. 2020 Dec;18(12):2545-2558. doi: 10.1111/pbi.13434. Epub 2020 Jun 30.
8
Genetic diversity analysis and variety identification using SSR and SNP markers in melon.利用 SSR 和 SNP 标记进行瓜类遗传多样性分析和品种鉴定。
BMC Plant Biol. 2023 Jan 18;23(1):39. doi: 10.1186/s12870-023-04056-7.
9
The haplotype-resolved T2T reference genome highlights structural variation underlying agronomic traits of melon.单倍型解析的端粒到端粒(T2T)参考基因组揭示了甜瓜农艺性状背后的结构变异。
Hortic Res. 2023 Aug 28;10(10):uhad182. doi: 10.1093/hr/uhad182. eCollection 2023 Oct.
10
Novel Allelic Gene Variations in () Were Identified in a Genetic Population of Melon ( L.).在甜瓜(L.)的遗传群体中鉴定出()的新型等位基因变异。
Int J Mol Sci. 2024 May 30;25(11):6011. doi: 10.3390/ijms25116011.

本文引用的文献

1
GeSeq - versatile and accurate annotation of organelle genomes.GeSeq - 细胞器基因组的多功能和准确注释。
Nucleic Acids Res. 2017 Jul 3;45(W1):W6-W11. doi: 10.1093/nar/gkx391.
2
Chloroplast genomes: diversity, evolution, and applications in genetic engineering.叶绿体基因组:多样性、进化及其在基因工程中的应用
Genome Biol. 2016 Jun 23;17(1):134. doi: 10.1186/s13059-016-1004-2.
3
Phylogeny of Cucumis based on isozyme variability and its comparison with plastome phylogeny.基于同工酶变异性的黄瓜系统发育及其与质体基因组系统发育的比较。
Theor Appl Genet. 1985 Dec;71(3):430-6. doi: 10.1007/BF00251183.
4
The Cucumis plastome: physical map, intrageneric variation and phylogenetic relationships.《黄瓜质体基因组:物理图谱、种内变异与系统发育关系》
Theor Appl Genet. 1985 Dec;71(3):417-29. doi: 10.1007/BF00251182.
5
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes:一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
6
BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons.BLAST 环图像生成器(BRIG):简单的原核生物基因组比较。
BMC Genomics. 2011 Aug 8;12:402. doi: 10.1186/1471-2164-12-402.
7
Reproductive biology of the andromonoecious Cucumis melo subsp. agrestis (Cucurbitaceae).雌雄同株野生黄瓜(葫芦科)的生殖生物学
Ann Bot. 2009 Nov;104(6):1129-39. doi: 10.1093/aob/mcp196. Epub 2009 Aug 11.
8
DNA changes tell us about rice domestication.DNA变化让我们了解水稻的驯化过程。
Curr Opin Plant Biol. 2009 Apr;12(2):185-92. doi: 10.1016/j.pbi.2009.01.004.
9
Genetic and molecular regulation of fruit and plant domestication traits in tomato and pepper.番茄和辣椒果实及植株驯化性状的遗传与分子调控
J Exp Bot. 2007;58(14):3841-52. doi: 10.1093/jxb/erm257. Epub 2007 Nov 23.
10
A multi-locus chloroplast phylogeny for the Cucurbitaceae and its implications for character evolution and classification.葫芦科的多位点叶绿体系统发育及其对性状进化和分类的影响。
Mol Phylogenet Evol. 2007 Aug;44(2):553-77. doi: 10.1016/j.ympev.2006.12.022. Epub 2007 Jan 8.