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基于数据挖掘和生物信息学方法验证RRP12在肝癌中的表达及其预后意义

Validating RRP12 Expression and Its Prognostic Significance in HCC Based on Data Mining and Bioinformatics Methods.

作者信息

Wei Chao, Wang Ben, Chen Zhong-Huo, Xiao Han, Tang Lei, Guan Jia-Fu, Yuan Rong-Fa, Yu Xin, Hu Zhi-Gang, Wu Hua-Jun, Dai Zhi, Wang Kai

机构信息

Hepato-Biliary-Pancreatic Surgery Division, Department of General Surgery, The Second Affiliated Hospital of Nanchang University, Nanchang, China.

Second Affiliated Hospital of Nanchang University, Jiangxi Province Key Laboratory of Molecular Medicine, Nanchang, China.

出版信息

Front Oncol. 2022 Feb 1;12:812009. doi: 10.3389/fonc.2022.812009. eCollection 2022.

Abstract

RRP12 (ribosomal RNA processing 12 homolog) is a nucleolar protein involved in the maturation and transport of eukaryotic ribosomal subunits and is a type of RNA binding protein. In recent years, considerable research has indicated that RRP12 is associated with the occurrence and development of multiple cancers. However, there is no research on RRP12 in hepatocellular carcinoma. Herein, we aimed to explore the role and significance of RRP12 in hepatocellular carcinoma.We used the TIMER and GEPIA databases to perform pan-cancer analyses of RRP12. The impact of RRP12 on the prognosis was analyzed through the GEPIA database. The relationship between RRP12 and immune cell infiltration was investigated by TIMER and GEPIA databases. Moreover, the expression of RRP12 in various liver cancer cells was evaluated by Western Blot to determine the cell line for the next experiment. Scratch test, Transwell test, and Edu tests were applied to validate the effects of RRP12 on the function of liver cancer cells. And the data were statistically analyzed.Pan-cancer analysis found that RPP12 was significantly upregulated in many cancers. Moreover, the prognostic analysis revealed that the difference in the expression of RRP12 has statistical significance for the overall survival rate and disease-free survival rate of liver cancer patients. In order to analyze the correlation between the expression level of RRP12 and clinical parameters, it was found that there was a significant negative correlation with tumor stage, tumor grade and tumor size. Univariate and multivariate analysis showed that RRP12 could be used as an independent prognostic factor for patients with hepatocellular carcinoma. Cellular experiments have proved that knocking down RRP12 can inhibit the proliferation, invasion, and metastasis of liver cancer cells.Therefore, RRP12 significantly affects the occurrence and development of HCC. Hence, RRP12 can become a potential target and prognostic biomarker for the treatment of hepatocellular carcinoma.

摘要

RRP12(核糖体RNA加工12同源物)是一种核仁蛋白,参与真核生物核糖体亚基的成熟和运输,是一种RNA结合蛋白类型。近年来,大量研究表明RRP12与多种癌症的发生发展有关。然而,目前尚无关于RRP12在肝细胞癌中的研究。在此,我们旨在探讨RRP12在肝细胞癌中的作用和意义。我们使用TIMER和GEPIA数据库对RRP12进行泛癌分析。通过GEPIA数据库分析RRP12对预后的影响。利用TIMER和GEPIA数据库研究RRP12与免疫细胞浸润的关系。此外,通过蛋白质免疫印迹法评估RRP12在各种肝癌细胞中的表达,以确定下一步实验所用的细胞系。应用划痕试验、Transwell试验和Edu试验验证RRP12对肝癌细胞功能的影响。并对数据进行统计学分析。泛癌分析发现,RPP12在许多癌症中显著上调。此外,预后分析显示,RRP12表达差异对肝癌患者的总生存率和无病生存率具有统计学意义。为分析RRP12表达水平与临床参数之间的相关性,发现其与肿瘤分期、肿瘤分级和肿瘤大小呈显著负相关。单因素和多因素分析表明,RRP12可作为肝细胞癌患者的独立预后因素。细胞实验证明,敲低RRP12可抑制肝癌细胞的增殖、侵袭和转移。因此,RRP12显著影响肝癌的发生发展。因此,RRP12可成为治疗肝细胞癌的潜在靶点和预后生物标志物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0392/8844371/a6a169765b47/fonc-12-812009-g001.jpg

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