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精制的1.2 枯草杆菌蛋白酶卡尔伯格与抑制剂依格林c形成的复合物的晶体结构。依格林的分子结构及其与枯草杆菌蛋白酶的详细相互作用。

Refined 1.2 A crystal structure of the complex formed between subtilisin Carlsberg and the inhibitor eglin c. Molecular structure of eglin and its detailed interaction with subtilisin.

作者信息

Bode W, Papamokos E, Musil D, Seemueller U, Fritz H

出版信息

EMBO J. 1986 Apr;5(4):813-8. doi: 10.1002/j.1460-2075.1986.tb04286.x.

Abstract

The crystal structure of the complex formed between eglin c, an elastase inhibitor from the medical leech, and subtilisin Carlsberg has been determined at 1.2 A resolution by a combination of Patterson search methods and isomorphous replacement techniques. The structure has been refined to a crystallographic R-value of 0.18 (8-1.2 A). Eglin consists of a four-stranded beta-sheet with an alpha-helical segment and the protease-binding loop fixed on opposite sides. This loop, which contains the reactive site Leu45I--Asp46I, is mainly held in its conformation by unique electrostatic/hydrogen bond interactions of Thr44I and Asp46I with the side chains of Arg53I and Arg51I which protrude from the hydrophobic core of the molecule. The conformation around the reactive site is similar to that found in other proteinase inhibitors. The nine residues of the binding loop Gly40I--Arg48I are involved in direct contacts with subtilisin. In this interaction, eglin segment Pro42I--Thr44I forms a three-stranded anti-parallel beta-sheet with subtilisin segments Gly100--Gly102 and Ser125--Gly127. The reactive site peptide bond of eglin is intact, and Ser221 OG of the enzyme is 2.81 A apart from the carbonyl carbon.

摘要

利用帕特森搜索法和同晶置换技术相结合,已在1.2埃分辨率下测定了医用蚂蟥的弹性蛋白酶抑制剂水蛭素c与枯草杆菌蛋白酶卡尔伯格形成的复合物的晶体结构。该结构已精修至晶体学R值为0.18(8 - 1.2埃)。水蛭素由一个四链β折叠片层组成,带有一个α螺旋片段,且蛋白酶结合环固定在相对的两侧。这个环包含反应位点Leu45I--Asp46I,其构象主要通过Thr44I和Asp46I与从分子疏水核心突出的Arg53I和Arg51I侧链的独特静电/氢键相互作用来维持。反应位点周围的构象与其他蛋白酶抑制剂中的相似。结合环Gly40I--Arg48I的九个残基参与了与枯草杆菌蛋白酶的直接接触。在这种相互作用中,水蛭素片段Pro42I--Thr44I与枯草杆菌蛋白酶片段Gly100--Gly102和Ser125--Gly127形成了一个三链反平行β折叠片层。水蛭素的反应位点肽键完整,酶的Ser221 OG与羰基碳相距2.81埃。

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