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不同色调的羽衣甘蓝——分析羽衣甘蓝品种相互关系的方法。

Different Shades of Kale-Approaches to Analyze Kale Variety Interrelations.

机构信息

Institute for Biology and Environmental Sciences, Carl von Ossietzky University Oldenburg, 26111 Oldenburg, Germany.

Fresh Forward Breeding & Marketing, 4024 BK Eck en Wiel, The Netherlands.

出版信息

Genes (Basel). 2022 Jan 26;13(2):232. doi: 10.3390/genes13020232.

Abstract

is a vegetable crop with an amazing morphological diversity. Among the various crops derived from , kale has been in the spotlight globally due to its various health-benefitting compounds and many different varieties. Knowledge of the existing genetic diversity is essential for the improved breeding of kale. Here, we analyze the interrelationships, population structures, and genetic diversity of 72 kale and cabbage varieties by extending our previous diversity analysis and evaluating the use of summed potential lengths of shared haplotypes (SPLoSH) as a new method for such analyses. To this end, we made use of the high-density 60K SNP array, analyzed SNPs included in an available genetic map, and used these resources to generate and evaluate the information from SPLoSH data. With our results we could consistently differentiate four groups of kale across all analyses: the curly kale varieties, Italian, American, and Russian varieties, as well as wild and cultivated types. The best results were achieved by using SPLoSH information, thus validating the use of this information in improving analyses of interrelations in kale. In conclusion, our definition of kale includes the curly varieties as the kales in a strict sense, regardless of their origin. These results contribute to a better understanding of the huge diversity of kale and its interrelations.

摘要

甘蓝是一种具有惊人形态多样性的蔬菜作物。在各种源于甘蓝的作物中,羽衣甘蓝因其具有多种有益健康的化合物和许多不同的品种而在全球范围内受到关注。了解现有的遗传多样性对于甘蓝的改良育种至关重要。在这里,我们通过扩展之前的多样性分析,评估了总和潜在共享单倍型长度(SPLoSH)作为一种新方法在这些分析中的应用,分析了 72 个羽衣甘蓝和白菜品种之间的相互关系、种群结构和遗传多样性。为此,我们利用高密度 60K SNP 阵列,分析了现有遗传图谱中包含的 SNP,并利用这些资源生成和评估了 SPLoSH 数据的信息。我们的结果能够一致地区分所有分析中的四个甘蓝组:皱叶甘蓝品种、意大利、美国和俄罗斯品种,以及野生和栽培类型。使用 SPLoSH 信息可以获得最佳结果,从而验证了在改善甘蓝相互关系分析中使用这种信息的有效性。总之,我们对羽衣甘蓝的定义包括卷曲品种,作为严格意义上的羽衣甘蓝,而不论其起源如何。这些结果有助于更好地理解羽衣甘蓝的巨大多样性及其相互关系。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e963/8872201/44a94f363048/genes-13-00232-g001.jpg

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