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单分子实时测序与传统培养技术揭示生乳中嗜冷菌的复杂群落结构及区域差异

Single Molecule Real-Time Sequencing and Traditional Cultivation Techniques Reveal Complex Community Structures and Regional Variations of Psychrotrophic Bacteria in Raw Milk.

作者信息

Du Bingyao, Meng Lu, Liu Huimin, Zheng Nan, Zhang Yangdong, Zhao Shengguo, Wang Jiaqi

机构信息

State Key Laboratory of Grassland Agro-Ecosystems, Key Laboratory of Grassland Livestock Industry Innovation, Ministry of Agriculture and Rural Affairs, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou, China.

Key Laboratory of Quality & Safety Control for Milk and Dairy Products of Ministry of Agriculture and Rural Affairs, Institute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.

出版信息

Front Microbiol. 2022 Feb 10;13:853263. doi: 10.3389/fmicb.2022.853263. eCollection 2022.

DOI:10.3389/fmicb.2022.853263
PMID:35222348
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8866939/
Abstract

In this study, we investigated the species composition and diversity of psychrotrophic bacteria in raw milk from Heilongjiang, Inner Mongolia, Gansu, Henan, Anhui, Jiangsu, Chongqing, and Hunan provinces in China using traditional cultivation and PacBio Single Molecule Real-Time sequencing methods. The isolated psychrotrophic bacteria were highly diverse, which composed of 21 genera and 59 species. accounted for 58.9% of the total genera while and were also highly represented (above 5.0%). In particular, occurred at a level of 16.9% and were present in relatively high proportions (above 4.0%). Regional differences were found significantly among the test regions except samples from Heilongjiang and Inner Mongolia were similar. Additionally, differences were observed between days in Henan, Anhui, and Jiangsu samples. Therefore, control strategies must be implemented on regional and season basis.

摘要

在本研究中,我们运用传统培养法和PacBio单分子实时测序方法,对中国黑龙江、内蒙古、甘肃、河南、安徽、江苏、重庆和湖南等省份生鲜乳中嗜冷菌的种类组成和多样性进行了调查。分离出的嗜冷菌具有高度多样性,由21个属和59个种组成。 占总属数的58.9%,而 和 也占比较高(超过5.0%)。特别是, 占比达16.9%, 存在比例相对较高(超过4.0%)。除黑龙江和内蒙古的样本相似外,测试区域之间存在显著的区域差异。此外,在河南、安徽和江苏的样本中,不同日期之间也存在差异。因此,必须根据区域和季节实施控制策略。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1523/8866939/e75937ca167a/fmicb-13-853263-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1523/8866939/ed42eda78cdd/fmicb-13-853263-g001.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1523/8866939/3c52964ee3aa/fmicb-13-853263-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1523/8866939/82157559cdb2/fmicb-13-853263-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1523/8866939/3e3d7d07fb6d/fmicb-13-853263-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1523/8866939/e75937ca167a/fmicb-13-853263-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1523/8866939/ed42eda78cdd/fmicb-13-853263-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1523/8866939/60aa8a09adf5/fmicb-13-853263-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1523/8866939/3c52964ee3aa/fmicb-13-853263-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1523/8866939/82157559cdb2/fmicb-13-853263-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1523/8866939/3e3d7d07fb6d/fmicb-13-853263-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1523/8866939/e75937ca167a/fmicb-13-853263-g006.jpg

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本文引用的文献

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Seasonality and Geography Have a Greater Influence than the Use of Chlorine-Based Cleaning Agents on the Microbiota of Bulk Tank Raw Milk.季节和地理位置对散装生牛乳菌群的影响大于含氯清洁剂的使用。
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PacBio sequencing revealed variation in the microbiota diversity, species richness and composition between milk collected from healthy and mastitis cows.
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