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血浆突变谱分析辅助组织检测可改善肺癌患者的治疗决策。

Complementing Tissue Testing With Plasma Mutation Profiling Improves Therapeutic Decision-Making for Patients With Lung Cancer.

作者信息

Choudhury Yukti, Tan Min-Han, Shi Jun Li, Tee Augustine, Ngeow Kao Chin, Poh Jonathan, Goh Ruth Rosalyn, Mong Jamie

机构信息

Lucence Diagnostics Pte. Ltd., Singapore, Singapore.

Lucence Health Inc, Palo Alto, CA, United States.

出版信息

Front Med (Lausanne). 2022 Feb 11;9:758464. doi: 10.3389/fmed.2022.758464. eCollection 2022.

Abstract

BACKGROUND

Tissue biopsy is an integral part of the diagnostic approach to lung cancer. It is however invasive and limited by heterogeneity. Liquid biopsies may complement tissue testing by providing additional molecular information and may be particularly helpful in patients from whom obtaining sufficient tissue for genomic profiling is challenging.

METHODS

Patients with suspected lung cancer ( = 71) were prospectively recruited. Blood and diagnostic tissue samples were collected within 48 h of each other. Plasma cell-free DNA (cfDNA) testing was done using an ultrasensitive amplicon-based next-generation sequencing (NGS) panel (plasma NGS testing). For cases diagnosed as non-small cell lung carcinoma (NSCLC) histology or cytology, targeted testing for epidermal growth factor receptor () mutations was performed using tissue biopsy samples (tissue testing), where available. Concordance of clinically actionable mutations between methods and sample types was assessed.

RESULTS

For confirmed NSCLC cases ( = 54), tissue test results were available only for 70.3% (38/54) due to sample inadequacies, compared to blood samples for 98.1% (53/54) cases. Tissue testing identified sensitizing (L858R or exon 19 deletion) mutation in 31.6% (12/38) of cases. Plasma NGS identified clinically actionable mutations in 37.7% (20/53) of cases, including mutations in two cases with no tissue results, and mutations in , and . The overall sensitivity of sensitizing mutation detection by plasma NGS was 75% (9/12), and specificity was 100% (25/25) in patients tested in both tissue and plasma NGS ( = 37). In this cohort of patients, tissue testing alone informed clinical decisions in 22.2% (12/54) of cases. Adding plasma NGS to tissue testing increased the detection rate of actionable mutations to 42.6% (23/54), representing a 1.9-fold increase in clinically relevant findings. The average turnaround time of plasma NGS was shorter than standard tissue testing (10 vs. 29.9 days, < 0.05).

CONCLUSIONS

In the first-line setting, plasma NGS was highly concordant with tissue testing. Plasma NGS increases the detection of actionable findings with a shorter time to results. This study outlines the clinical utility of complementary plasma mutation profiling in the routine management of lung cancer patients.

摘要

背景

组织活检是肺癌诊断方法的一个重要组成部分。然而,它具有侵入性且受异质性限制。液体活检可以通过提供额外的分子信息来补充组织检测,对于获取足够组织进行基因组分析具有挑战性的患者可能特别有帮助。

方法

前瞻性招募了疑似肺癌患者(n = 71)。在彼此48小时内采集血液和诊断性组织样本。使用基于超灵敏扩增子的下一代测序(NGS)面板进行血浆游离DNA(cfDNA)检测(血浆NGS检测)。对于诊断为非小细胞肺癌(NSCLC)组织学或细胞学的病例,在有可用组织活检样本的情况下,使用组织活检样本进行表皮生长因子受体(EGFR)突变的靶向检测(组织EGFR检测)。评估方法和样本类型之间临床可操作突变的一致性。

结果

对于确诊的NSCLC病例(n = 54),由于样本不足,仅70.3%(38/54)的病例可获得组织EGFR检测结果,而98.1%(53/54)的病例可获得血液样本结果。组织EGFR检测在31.6%(12/38)的病例中发现了敏感的EGFR(L858R或外显子19缺失)突变。血浆NGS在37.7%(20/53)的病例中发现了临床可操作突变,包括两例无组织EGFR结果的病例中的EGFR突变,以及KRAS、NRAS和BRAF突变。在同时进行组织EGFR和血浆NGS检测的患者(n = 37)中,血浆NGS检测敏感EGFR突变的总体敏感性为75%(9/12),特异性为100%(25/25)。在该队列患者中,仅组织EGFR检测为22.2%(12/54)的病例提供了临床决策依据。将血浆NGS添加到组织EGFR检测中可将可操作突变的检测率提高到42.6%(23/54),临床相关发现增加了1.9倍。血浆NGS的平均周转时间比标准组织检测短(10天对29.9天,P < 0.05)。

结论

在一线治疗中,血浆NGS与组织EGFR检测高度一致。血浆NGS可提高可操作结果的检测率,且结果获取时间更短。本研究概述了补充性血浆突变分析在肺癌患者常规管理中的临床应用价值。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a14d/8873935/8d74574038b0/fmed-09-758464-g0001.jpg

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