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肾透明细胞癌治疗与预后中坏死性凋亡格局的鉴定与定量分析

Identification and Quantification of Necroptosis Landscape on Therapy and Prognosis in Kidney Renal Clear Cell Carcinoma.

作者信息

Xin Sheng, Mao Jiaquan, Duan Chen, Wang Jiaxin, Lu Yuchao, Yang Jun, Hu Jia, Liu Xiaming, Guan Wei, Wang Tao, Wang Shaogang, Liu Jihong, Song Wen, Song Xiaodong

机构信息

Department of Urology, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China.

出版信息

Front Genet. 2022 Feb 14;13:832046. doi: 10.3389/fgene.2022.832046. eCollection 2022.

Abstract

Kidney renal clear cell carcinoma (KIRC) has high morbidity and gradually increased in recent years, and the rate of progression once relapsed is high. At present, owing to lack of effective prognosis predicted markers and post-recurrence drug selection guidelines, the prognosis of KIRC patients is greatly affected. Necroptosis is a regulated form of cell necrosis in a way that is independent of caspase. Induced necroptosis is considered an effective strategy in chemotherapy and targeted drugs, and it can also be used to improve the efficacy of immunotherapy. Herein, we quantified the necroptosis landscape of KIRC patients from The Cancer Genome Atlas (TCGA) database and divided them into two distinct necroptosis-related patterns (C1 and C2) through the non-negative matrix factorization (NMF) algorithm. Multi-analysis revealed the differences in clinicopathological characteristics and tumor immune microenvironment (TIME). Then, we constructed the NRG prognosis signature (NRGscore), which contained 10 NRGs (PLK1, APP, TNFRSF21, CXCL8, MYCN, TNFRSF1A, TRAF2, HSP90AA1, STUB1, and FLT3). We confirmed that NRGscore could be used as an independent prognostic marker for KIRC patients and performed excellent stability and accuracy. A nomogram model was also established to provide a more beneficial prognostic indicator for the clinic. We found that NRGscore was significantly correlated with clinicopathological characteristics, TIME, and tumor mutation burden (TMB) of KIRC patients. Moreover, NRGscore had effective guiding significance for immunotherapy, chemotherapy, and targeted drugs.

摘要

肾透明细胞癌(KIRC)发病率高,近年来呈逐渐上升趋势,且一旦复发其进展速度较快。目前,由于缺乏有效的预后预测标志物和复发后药物选择指南,KIRC患者的预后受到很大影响。坏死性凋亡是一种独立于半胱天冬酶的细胞坏死调控形式。诱导坏死性凋亡被认为是化疗和靶向药物治疗中的一种有效策略,也可用于提高免疫治疗的疗效。在此,我们从癌症基因组图谱(TCGA)数据库中量化了KIRC患者的坏死性凋亡图谱,并通过非负矩阵分解(NMF)算法将他们分为两种不同的坏死性凋亡相关模式(C1和C2)。多分析揭示了临床病理特征和肿瘤免疫微环境(TIME)的差异。然后,我们构建了NRG预后特征(NRGscore),其中包含10个NRG(PLK1、APP、TNFRSF21、CXCL8、MYCN、TNFRSF1A、TRAF2、HSP90AA1、STUB1和FLT3)。我们证实NRGscore可作为KIRC患者的独立预后标志物,且具有出色的稳定性和准确性。还建立了列线图模型,为临床提供更有益的预后指标。我们发现NRGscore与KIRC患者的临床病理特征、TIME以及肿瘤突变负荷(TMB)显著相关。此外,NRGscore对免疫治疗、化疗和靶向药物具有有效的指导意义。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3960/8882778/f1b8f7a59107/fgene-13-832046-g001.jpg

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