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利用细菌生物报告基因增强双核苷酸多态性检测:转录激活因子YhaJ的定向进化

Enhancing DNT Detection by a Bacterial Bioreporter: Directed Evolution of the Transcriptional Activator YhaJ.

作者信息

Elad Tal, Shemer Benjamin, Simanowitz Shilat, Kabessa Yossef, Mizrachi Yosef, Gold Azriel, Shpigel Etai, Agranat Aharon J, Belkin Shimshon

机构信息

Department of Plant and Environmental Sciences, Institute of Life Sciences, The Hebrew University of Jerusalem, Jerusalem, Israel.

Department of Applied Physics and the Brojde Center for Innovative Engineering and Computer Science, The Hebrew University of Jerusalem, Jerusalem, Israel.

出版信息

Front Bioeng Biotechnol. 2022 Feb 14;10:821835. doi: 10.3389/fbioe.2022.821835. eCollection 2022.

Abstract

Detection of buried landmines is a dangerous and complicated task that consumes large financial resources and poses significant risks to the personnel involved. A potential alternative to conventional detection methodologies is the use of microbial bioreporters, capable of emitting an optical signal upon exposure to explosives, thus revealing to a remote detector the location of buried explosive devices. We have previously reported the design, construction, and optimization of an -based bioreporter for the detection of 2,4,6-trinitrotoluene (TNT) and its accompanying impurity 2,4-dinitrotoluene (DNT). Here we describe the further enhancement of this bioreporter by the directed evolution of YhaJ, the transcriptional activator of the gene promoter, the sensing element of the bioreporter's molecular circuit. This process resulted in a 37-fold reduction of the detection threshold, as well as significant enhancements to signal intensity and response time, rendering this sensor strain more suitable for detecting the minute concentrations of DNT in the soil above buried landmines. The capability of this enhanced bioreporter to detect DNT buried in sand is demonstrated.

摘要

探测埋藏的地雷是一项危险且复杂的任务,它耗费大量资金,还会给相关人员带来重大风险。传统探测方法的一种潜在替代方案是使用微生物生物报告器,这种生物报告器在接触爆炸物时能够发出光信号,从而向远程探测器揭示埋藏爆炸装置的位置。我们之前报道过一种基于[具体内容缺失]的生物报告器的设计、构建和优化,用于检测2,4,6 - 三硝基甲苯(TNT)及其伴随杂质2,4 - 二硝基甲苯(DNT)。在此,我们描述了通过对YhaJ进行定向进化来进一步增强这种生物报告器,YhaJ是该基因启动子的转录激活因子,也是生物报告器分子回路的传感元件。这一过程使检测阈值降低了37倍,同时信号强度和响应时间也显著增强,使得这种传感器菌株更适合检测埋藏地雷上方土壤中微量的DNT。本文展示了这种增强型生物报告器探测埋在沙子中的DNT的能力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c071/8882911/f1b8aeda7ac3/fbioe-10-821835-g001.jpg

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