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单细胞转录组学将恶性 T 细胞与皮肤 T 细胞淋巴瘤中的肿瘤免疫图谱联系起来。

Single-cell transcriptomics links malignant T cells to the tumor immune landscape in cutaneous T cell lymphoma.

机构信息

Department of Dermatology and Venerology, Peking University First Hospital, Beijing, 100034, China.

Beijing Key Laboratory of Molecular Diagnosis on Dermatoses, Beijing, 100034, China.

出版信息

Nat Commun. 2022 Mar 3;13(1):1158. doi: 10.1038/s41467-022-28799-3.

DOI:10.1038/s41467-022-28799-3
PMID:35241665
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8894386/
Abstract

Cutaneous T cell lymphoma (CTCL) represents a heterogeneous group of non-Hodgkin lymphoma distinguished by the presence of clonal malignant T cells. The heterogeneity of malignant T cells and the complex tumor microenvironment remain poorly characterized. With single-cell RNA analysis and bulk whole-exome sequencing on 19 skin lesions from 15 CTCL patients, we decipher the intra-tumor and inter-lesion diversity of CTCL patients and propose a multi-step tumor evolution model. We further establish a subtyping scheme based on the molecular features of malignant T cells and their pro-tumorigenic microenvironments: the T group, demonstrating a cytotoxic effector memory T cell phenotype, shows more M2 macrophages infiltration, while the T group, featured by a central memory T cell phenotype and adverse patient outcome, is infiltrated by highly exhausted CD8 reactive T cells, B cells and Tregs with suppressive activities. Our results establish a solid basis for understanding the nature of CTCL and pave the way for future precision medicine for CTCL patients.

摘要

皮肤 T 细胞淋巴瘤 (CTCL) 是一组异质性非霍奇金淋巴瘤,其特征是存在克隆性恶性 T 细胞。恶性 T 细胞的异质性和复杂的肿瘤微环境仍未得到充分描述。通过对 15 名 CTCL 患者的 19 个皮肤病变进行单细胞 RNA 分析和全外显子组测序,我们破译了 CTCL 患者的肿瘤内和病变间的多样性,并提出了一个多步骤的肿瘤进化模型。我们进一步根据恶性 T 细胞及其促肿瘤微环境的分子特征建立了一种分型方案:T 组表现出细胞毒性效应记忆 T 细胞表型,显示出更多的 M2 巨噬细胞浸润,而 T 组则表现出中央记忆 T 细胞表型和不良的患者预后,浸润着具有高度耗竭性的 CD8 反应性 T 细胞、B 细胞和具有抑制活性的 Tregs。我们的研究结果为理解 CTCL 的本质奠定了坚实的基础,并为 CTCL 患者的未来精准医学铺平了道路。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cd2f/8894386/2267754abffc/41467_2022_28799_Fig7_HTML.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cd2f/8894386/2267754abffc/41467_2022_28799_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cd2f/8894386/e07897564683/41467_2022_28799_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cd2f/8894386/f0304896bf85/41467_2022_28799_Fig2_HTML.jpg
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