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What does AlphaFold mean for drug discovery?AlphaFold对药物发现意味着什么?
Nat Rev Drug Discov. 2021 Oct;20(10):725-727. doi: 10.1038/d41573-021-00161-0.
2
Highly accurate protein structure prediction for the human proteome.高精准度的人类蛋白质组蛋白结构预测。
Nature. 2021 Aug;596(7873):590-596. doi: 10.1038/s41586-021-03828-1. Epub 2021 Jul 22.
3
Accurate prediction of protein structures and interactions using a three-track neural network.使用三轨神经网络准确预测蛋白质结构和相互作用。
Science. 2021 Aug 20;373(6557):871-876. doi: 10.1126/science.abj8754. Epub 2021 Jul 15.
4
Highly accurate protein structure prediction with AlphaFold.利用 AlphaFold 进行高精度蛋白质结构预测。
Nature. 2021 Aug;596(7873):583-589. doi: 10.1038/s41586-021-03819-2. Epub 2021 Jul 15.
5
C subunit of the ATP synthase is an amyloidogenic calcium dependent channel-forming peptide with possible implications in mitochondrial permeability transition.ATP 合酶 C 亚基是一种淀粉样原纤维钙依赖性通道形成肽,可能与线粒体通透性转换有关。
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Interface mobility between monomers in dimeric bovine ATP synthase participates in the ultrastructure of inner mitochondrial membranes.单体间的界面迁移在二聚体牛心 ATP 合酶中参与了线粒体内膜的超微结构。
Proc Natl Acad Sci U S A. 2021 Feb 23;118(8). doi: 10.1073/pnas.2021012118.
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ATP synthase hexamer assemblies shape cristae of Toxoplasma mitochondria.ATP 合酶六聚体组装形成弓形虫线粒体嵴。
Nat Commun. 2021 Jan 5;12(1):120. doi: 10.1038/s41467-020-20381-z.
8
Structure of mycobacterial ATP synthase bound to the tuberculosis drug bedaquiline.结核分枝杆菌 ATP 合酶与抗结核药物贝达喹啉结合的结构。
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9
Type III ATP synthase is a symmetry-deviated dimer that induces membrane curvature through tetramerization.III 型 ATP 合酶是一种对称性偏离的二聚体,通过四聚化诱导膜弯曲。
Nat Commun. 2020 Oct 22;11(1):5342. doi: 10.1038/s41467-020-18993-6.
10
Recent progress in the use of mitochondrial membrane permeability transition pore in mitochondrial dysfunction-related disease therapies.线粒体膜通透性转换孔在与线粒体功能障碍相关疾病治疗中的应用的最新进展。
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ATP 合酶 FF 的结构、功能及基于结构的药物设计。

ATP synthase FF structure, function, and structure-based drug design.

机构信息

Research Center for Molecular Mechanisms of Aging and Age-Related Diseases, Moscow Institute of Physics and Technology, 141700, Dolgoprudny, Russia.

Joint Institute for Nuclear Research, 141980, Dubna, Russia.

出版信息

Cell Mol Life Sci. 2022 Mar 6;79(3):179. doi: 10.1007/s00018-022-04153-0.

DOI:10.1007/s00018-022-04153-0
PMID:35253091
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11072866/
Abstract

ATP synthases are unique rotatory molecular machines that supply biochemical reactions with adenosine triphosphate (ATP)-the universal "currency", which cells use for synthesis of vital molecules and sustaining life. ATP synthases of F-type (FF) are found embedded in bacterial cellular membrane, in thylakoid membranes of chloroplasts, and in mitochondrial inner membranes in eukaryotes. The main functions of ATP synthases are control of the ATP synthesis and transmembrane potential. Although the key subunits of the enzyme remain highly conserved, subunit composition and structural organization of ATP synthases and their assemblies are significantly different. In addition, there are hypotheses that the enzyme might be involved in the formation of the mitochondrial permeability transition pore and play a role in regulation of the cell death processes. Dysfunctions of this enzyme lead to numerous severe disorders with high fatality levels. In our review, we focus on FF-structure-based approach towards development of new therapies by using FF structural features inherited by the representatives of this enzyme family from different taxonomy groups. We analyzed and systematized the most relevant information about the structural organization of FF to discuss how this approach might help in the development of new therapies targeting ATP synthases and design tools for cellular bioenergetics control.

摘要

ATP 合酶是独特的旋转分子机器,为生化反应提供三磷酸腺苷 (ATP)-细胞用于合成生命必需分子和维持生命的通用“货币”。F 型 (FF) 的 ATP 合酶存在于细菌细胞膜、叶绿体类囊体膜和真核生物的线粒体内膜中。ATP 合酶的主要功能是控制 ATP 的合成和跨膜电位。尽管该酶的关键亚基保持高度保守,但 ATP 合酶及其组装体的亚基组成和结构组织有很大的不同。此外,还有假说认为该酶可能参与线粒体通透性转换孔的形成,并在细胞死亡过程的调节中发挥作用。该酶的功能障碍导致许多严重疾病,死亡率很高。在我们的综述中,我们关注基于 FF 结构的方法,利用该酶家族的代表从不同分类群继承的 FF 结构特征,来开发新的治疗方法。我们分析和系统化了关于 FF 结构组织的最相关信息,讨论了这种方法如何有助于开发针对 ATP 合酶的新治疗方法,并设计细胞生物能量控制的工具。