Division of Drug Discovery and Safety, Leiden Academic Centre for Drug Research, Leiden University, the Netherlands; Oncode Institute, Utrecht, the Netherlands.
Oncode Institute, Utrecht, the Netherlands; Molecular Physiology, Leiden Institute of Chemistry, Leiden University, the Netherlands.
Drug Discov Today. 2022 Jun;27(6):1661-1670. doi: 10.1016/j.drudis.2022.03.005. Epub 2022 Mar 14.
The integration of machine learning and structure-based methods has proven valuable in the past as a way to prioritize targets and compounds in early drug discovery. In oncological research, these methods can be highly beneficial in addressing the diversity of neoplastic diseases portrayed by the different hallmarks of cancer. Here, we review six use case scenarios for integrated computational methods, namely driver prediction, computational mutagenesis, (off)-target prediction, binding site prediction, virtual screening, and allosteric modulation analysis. We address the heterogeneity of integration approaches and individual methods, while acknowledging their current limitations and highlighting their potential to bring drugs for personalized oncological therapies to the market faster.
机器学习和基于结构的方法的整合在过去已被证明是一种有价值的方法,可以优先考虑早期药物发现中的靶标和化合物。在肿瘤学研究中,这些方法在解决由癌症的不同标志所描绘的肿瘤疾病的多样性方面非常有益。在这里,我们回顾了六种集成计算方法的用例场景,即驱动子预测、计算诱变、(脱靶)预测、结合位点预测、虚拟筛选和变构调节分析。我们讨论了整合方法和个别方法的异质性,同时承认它们目前的局限性,并强调它们有可能更快地将针对个体化肿瘤治疗的药物推向市场。