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红带扁股臭蝽基因组染色体长度组装(英文:Chromosome length genome assembly of the redbanded stink bug, Piezodorus guildinii (Westwood).)

Chromosome length genome assembly of the redbanded stink bug, Piezodorus guildinii (Westwood).

机构信息

Boyce Thompson Institute, 533 Tower Road, Ithaca, NY, 14853, USA.

Southern Insect Management Research Unit, USDA ARS, Stoneville, MS, 38776, USA.

出版信息

BMC Res Notes. 2022 Mar 22;15(1):115. doi: 10.1186/s13104-022-05924-5.

Abstract

OBJECTIVE

The redbanded stink bug (RBSB), Piezodorus guildinii (Hemiptera: Pentatomidae), is native to the Caribbean Basin and is currently considered an invasive pest in Florida, Louisiana, Mississippi, and Texas in the southern United States. Although RBSB is an economically important invasive pest in the USA, relatively few studies have been conducted to understand molecular mechanisms, population genetic structure, and the genetic basis of resistance to insecticides. The objective of this work was to obtain a high-quality genome assembly to develop genomic resources to conduct population genetic, genomic, and physiological studies of the RBSB.

RESULTS

The genome of RBSB was sequenced with Pacific Biosciences technology followed by two rounds of scaffolding using Chicago libraries and HiC proximity ligation to obtain a high-quality assembly. The genome assembly contained 800 scaffolds larger than 1 kbp and the N50 was 170.84 Mbp. The largest scaffold was 222.22 Mbp and 90% of the genome was included in the 7 scaffolds larger than 118 Mbp. The number of megabase scaffolds also matched the number of chromosomes in this insect. The genome sequence will facilitate the development of resources to conduct studies on genetics, transcriptomics, and physiology of RBSB.

摘要

目的

红带臭蝽(RBSB),Piezodorus guildinii(半翅目:猎蝽科),原产于加勒比海地区,目前被认为是美国南部佛罗里达州、路易斯安那州、密西西比州和得克萨斯州的入侵害虫。尽管 RBSB 是美国具有重要经济意义的入侵害虫,但相对较少的研究旨在了解分子机制、种群遗传结构以及对杀虫剂的抗性的遗传基础。这项工作的目的是获得高质量的基因组组装,以开发基因组资源,从而对 RBSB 的种群遗传、基因组和生理进行研究。

结果

使用 Pacific Biosciences 技术对 RBSB 进行了基因组测序,然后使用芝加哥文库进行了两轮支架构建,并使用 HiC 邻近连接,以获得高质量的组装。基因组组装包含 800 个大于 1kbp 的支架,N50 为 170.84Mbp。最大的支架为 222.22Mbp,基因组的 90%包含在 7 个大于 118Mbp 的支架中。兆碱基支架的数量也与该昆虫的染色体数量相匹配。基因组序列将有助于开发资源,以开展 RBSB 遗传学、转录组学和生理学研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3049/8939125/49b0b0debb14/13104_2022_5924_Fig1_HTML.jpg

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