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非小细胞肺癌中 的全景、相关基因组改变,及其与免疫肿瘤生物标志物的相互关系。

Landscape of , Associated Genomic Alterations, and Interrelation With Immuno-Oncology Biomarkers in -Mutated Cancers.

机构信息

Levine Cancer Institute, Atrium Health, Charlotte, NC.

Tempus Labs Inc, Chicago, IL.

出版信息

JCO Precis Oncol. 2022 Mar;6:e2100245. doi: 10.1200/PO.21.00245.

Abstract

PURPOSE

Promising single-agent activity from sotorasib and adagrasib in -mutant tumors has provided clinical evidence of effective KRAS signaling inhibition. However, comprehensive analysis of -variant prevalence, genomic alterations, and the relationship between and immuno-oncology biomarkers is lacking.

MATERIALS AND METHODS

Retrospective analysis of deidentified records from 79,004 patients with various cancers who underwent next-generation sequencing was performed. Fisher's exact test evaluated the association between cancer subtypes and variants. Logistic regression assessed comutations with other oncogenes and the association between variants and immuno-oncology biomarkers.

RESULTS

Of the 79,004 samples assessed, 13,758 (17.4%) harbored mutations, with 1,632 (11.9%) harboring and 12,126 (88.1%) harboring other variants (). Compared with across all tumor subtypes, was more prevalent in females (56% 51%, false discovery rate-adjusted value [FDR-] = .0006), current or prior smokers (85% 56%, FDR- < .0001), and patients age > 60 years (73% 63%, FDR- ≤ .0001). The most frequent variants across all subtypes were G12D (29.5%), G12V (23.0%), G12C (11.9%), G13D (6.5%), and G12R (6.2%). was most prevalent in patients with non-small-cell lung cancer (9%), appendiceal (3.9%), colorectal (3.2%), tumor of unknown origin (1.6%), small bowel (1.43%), and pancreatic (1.3%) cancers. Compared with -mutated, -mutated tumors were significantly associated with tumor mutational burden-high status (17.9% 8.4%, odds ratio [OR] = 2.38; FDR- < .0001). -mutated tumors exhibited a distinct comutation profile from -mutated tumors, including higher comutations of (20.59% 5.95%, OR = 4.10; FDR- < .01) and (15.38% 4.61%, OR = 3.76; FDR- < .01).

CONCLUSION

This study presents the first large-scale, pan-cancer genomic characterization of . The mutation was more prevalent in females and older patients and appeared to be associated with smoking status. tumors exhibited a distinct comutation profile and were associated with tumor mutational burden-high status.

摘要

目的

在 - 突变肿瘤中,索托拉西布和阿达格拉西布的单一药物活性令人鼓舞,为 KRAS 信号抑制的有效性提供了临床证据。然而,缺乏对 - 变体流行率、基因组改变以及 和免疫肿瘤标志物之间关系的综合分析。

材料和方法

对 79004 名接受下一代测序的各种癌症患者的匿名记录进行回顾性分析。Fisher 精确检验评估了癌症亚型与 变异之间的关联。逻辑回归评估了 与其他致癌基因的共突变以及 变异与免疫肿瘤标志物之间的关系。

结果

在评估的 79004 个样本中,13758 个(17.4%)携带 突变,其中 1632 个(11.9%)携带 ,12126 个(88.1%)携带其他 变体()。与所有肿瘤亚型相比, 在女性中更为普遍(56%比 51%,经错误发现率调整的 值[FDR-] =.0006),当前或以前的吸烟者(85%比 56%,FDR- <.0001)和年龄> 60 岁的患者(73%比 63%,FDR- ≤.0001)。所有亚型中最常见的 变体是 G12D(29.5%)、G12V(23.0%)、G12C(11.9%)、G13D(6.5%)和 G12R(6.2%)。 在非小细胞肺癌(9%)、阑尾(3.9%)、结直肠癌(3.2%)、来源不明肿瘤(1.6%)、小肠(1.43%)和胰腺癌(1.3%)患者中最为普遍。与 突变相比, 突变的肿瘤与肿瘤突变负担高状态显著相关(17.9%比 8.4%,比值比[OR] = 2.38;FDR- <.0001)。 突变的肿瘤与 突变的肿瘤具有明显不同的共突变谱,包括更高的 共突变(20.59%比 5.95%,OR = 4.10;FDR- <.01)和 共突变(15.38%比 4.61%,OR = 3.76;FDR- <.01)。

结论

本研究首次对 进行了大规模的泛癌种基因组特征描述。 突变在女性和老年患者中更为常见,似乎与吸烟状态有关。 肿瘤表现出独特的共突变谱,并与肿瘤突变负担高状态相关。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7e06/8966967/d2a496691f59/po-6-e2100245-g003.jpg

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