Department of Health Information Technology, School of Management and Medical Informatics, Tabriz University of Medical Sciences, Tabriz, Iran.
Department of Pharmaceutical Sciences, College of Pharmacy, Nova Southeastern University, Fort Lauderdale, Florida, United States.
Brief Bioinform. 2022 May 13;23(3). doi: 10.1093/bib/bbac075.
Combinational pharmacotherapy with the synergistic/additive effect is a powerful treatment strategy for complex diseases such as malignancies. Identifying synergistic combinations with various compounds and structures requires testing a large number of compound combinations. However, in practice, examining different compounds by in vivo and in vitro approaches is costly, infeasible and challenging. In the last decades, significant success has been achieved by expanding computational methods in different pharmacological and bioinformatics domains. As promising tools, computational approaches such as machine learning algorithms (MLAs) are used for prioritizing combinational pharmacotherapies. This review aims to provide the models developed to predict synergistic drug combinations in cancer by MLAs with various information, including gene expression, protein-protein interactions, metabolite interactions, pathways and pharmaceutical information such as chemical structure, molecular descriptor and drug-target interactions.
联合药物治疗具有协同/增效作用,是治疗恶性等复杂疾病的一种强有力的治疗策略。要确定具有各种化合物和结构的协同组合,需要测试大量的化合物组合。然而,在实践中,通过体内和体外方法来检查不同的化合物既昂贵又不可行,还具有挑战性。在过去的几十年中,通过在不同的药理学和生物信息学领域扩展计算方法,已经取得了重大的成功。作为有前途的工具,计算方法(如机器学习算法(MLAs))用于对联合药物治疗进行优先级排序。这篇综述旨在提供通过 MLAs 开发的用于预测癌症中协同药物组合的模型,这些模型使用了各种信息,包括基因表达、蛋白质-蛋白质相互作用、代谢物相互作用、途径以及药物信息,如化学结构、分子描述符和药物-靶点相互作用。