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甜菜红、甜菜黄素及其 C15-差向异构体通过构象理论、分子动力学、密度泛函理论和红外光谱研究抗氧化活性的机制。

Mechanism of Antioxidant Activity of Betanin, Betanidin and Respective C15-Epimers via Shape Theory, Molecular Dynamics, Density Functional Theory and Infrared Spectroscopy.

机构信息

Faculty of Exact and Applied Sciences, Instituto Tecnológico Metropolitano ITM, Cll. 73 # 76A-354, Medellín 050034, Colombia.

Faculty of Basic Sciences, University of Medellin, Cra. 87 # 30-65, Medellín 050026, Colombia.

出版信息

Molecules. 2022 Mar 21;27(6):2003. doi: 10.3390/molecules27062003.

DOI:10.3390/molecules27062003
PMID:35335368
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8954076/
Abstract

Betanin and betanidin are compounds with extensive interest; they are effectively free radical scavengers. The present work aims to elucidate the differences between the mechanism of the antioxidant activity of betanin, betanidin, and their respective C15-epimers. Shape Theory establishes comparisons between the molecules' geometries and determines parallelisms with the descriptors BDE, PA, ETE IP, PDE, and infrared spectra (IR) obtained from the molecule simulations. Furthermore, the molecules were optimized using the B3LYP/6-31+G(d,p) protocol. Finally, the molecular docking technique analyzes the antioxidant activity of the compounds in the complex with the therapeutic target xanthine oxidase (XO), based on a new proposal for the geometrical arrangement of the ligand atoms in the framework of Shape Theory. The results obtained indicate that the SPLET mechanism is the most favorable in all the molecules studied and that the first group that loses the hydrogen atom in the four molecules is the C17COOH, presenting less PA the isobetanidin. Furthermore, regarding the molecular docking, the interactions of these compounds with the target were favorable, standing out to a greater extent the interactions of isobetanidin with XO, which were analyzed after applying molecular dynamics.

摘要

甜菜红和甜菜苷是具有广泛研究兴趣的化合物;它们是有效的自由基清除剂。本工作旨在阐明甜菜红、甜菜苷及其各自的 C15-差向异构体的抗氧化活性机制之间的差异。形状理论在分子的几何形状之间建立了比较,并确定了与从分子模拟中获得的 BDE、PA、ETE IP、PDE 和红外光谱 (IR) 描述符的平行关系。此外,使用 B3LYP/6-31+G(d,p) 方案对分子进行了优化。最后,基于形状理论框架中配体原子的几何排列的新提议,分子对接技术分析了化合物在黄嘌呤氧化酶 (XO) 治疗靶点复合物中的抗氧化活性。所得结果表明,在所有研究的分子中,SPLET 机制是最有利的,并且在这四个分子中第一个失去氢原子的是 C17COOH,异甜菜苷的 PA 值较低。此外,关于分子对接,这些化合物与靶标的相互作用是有利的,异甜菜苷与 XO 的相互作用更为突出,在应用分子动力学后对其进行了分析。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/218e/8954076/7a31429e58b8/molecules-27-02003-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/218e/8954076/9e42ebff305f/molecules-27-02003-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/218e/8954076/1be14931b2bb/molecules-27-02003-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/218e/8954076/e9aa9d5ad08b/molecules-27-02003-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/218e/8954076/603541e4bf5e/molecules-27-02003-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/218e/8954076/7a31429e58b8/molecules-27-02003-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/218e/8954076/9e42ebff305f/molecules-27-02003-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/218e/8954076/1be14931b2bb/molecules-27-02003-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/218e/8954076/e9aa9d5ad08b/molecules-27-02003-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/218e/8954076/603541e4bf5e/molecules-27-02003-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/218e/8954076/7a31429e58b8/molecules-27-02003-g005.jpg

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