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对Piezo1的计算研究揭示了关键的脂质-蛋白质相互作用、通道激活和激动剂结合的相关见解。

Computational studies of Piezo1 yield insights into key lipid-protein interactions, channel activation, and agonist binding.

作者信息

Lin Yiechang, Buyan Amanda, Corry Ben

机构信息

Research School of Biology, Australian National University, Canberra, Australia.

出版信息

Biophys Rev. 2021 Oct 13;14(1):209-219. doi: 10.1007/s12551-021-00847-0. eCollection 2022 Feb.

DOI:10.1007/s12551-021-00847-0
PMID:35340596
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8921400/
Abstract

Piezo1 is a mechanically gated ion channel responsible for converting mechanical stimuli into electrical signals in mammals, playing critical roles in vascular development and blood pressure regulation. Dysfunction of Piezo1 has been linked to several disorders, including hereditary xerocytosis (gain-of-function) and generalised lymphatic dysplasia (loss-of-function), as well as a common polymorphism associated with protection against severe malaria. Despite the important physiological roles played by Piezo1, its recent discovery means that many aspects underlying its function are areas of active research. The recently elucidated cryo-EM structures of Piezo1 have paved the way for computational studies, specifically molecular dynamic simulations, to examine the protein's behaviour at an atomistic level. These studies provide valuable insights to Piezo1's interactions with surrounding membrane lipids, a small-molecule agonist named Yoda1, and Piezo1's activation mechanisms. In this review, we summarise and discuss recent papers which use computational techniques in combination with experimental approaches such as electrophysiology/mutagenesis studies to investigate Piezo1. We also discuss how to mitigate some shortcomings associated with using computational techniques to study Piezo1 and outline potential avenues of future research.

摘要

Piezo1是一种机械门控离子通道,负责在哺乳动物中将机械刺激转化为电信号,在血管发育和血压调节中发挥关键作用。Piezo1功能障碍与多种疾病有关,包括遗传性口形红细胞增多症(功能获得性)和全身性淋巴管发育异常(功能丧失性),以及与预防严重疟疾相关的一种常见多态性。尽管Piezo1发挥着重要的生理作用,但其最近才被发现,这意味着其功能的许多方面仍是活跃的研究领域。最近阐明的Piezo1冷冻电镜结构为计算研究,特别是分子动力学模拟,在原子水平上研究该蛋白质的行为铺平了道路。这些研究为Piezo1与周围膜脂、一种名为Yoda1的小分子激动剂的相互作用以及Piezo1的激活机制提供了有价值的见解。在这篇综述中,我们总结并讨论了最近的一些论文,这些论文结合电生理学/诱变研究等实验方法,使用计算技术来研究Piezo1。我们还讨论了如何减轻与使用计算技术研究Piezo1相关的一些缺点,并概述了未来潜在的研究途径。

相似文献

1
Computational studies of Piezo1 yield insights into key lipid-protein interactions, channel activation, and agonist binding.对Piezo1的计算研究揭示了关键的脂质-蛋白质相互作用、通道激活和激动剂结合的相关见解。
Biophys Rev. 2021 Oct 13;14(1):209-219. doi: 10.1007/s12551-021-00847-0. eCollection 2022 Feb.
2
Structural and thermodynamic framework for PIEZO1 modulation by small molecules.小分子对 PIEZO1 调节的结构和热力学框架。
Proc Natl Acad Sci U S A. 2023 Dec 12;120(50):e2310933120. doi: 10.1073/pnas.2310933120. Epub 2023 Dec 7.
3
Piezo1 Forms Specific, Functionally Important Interactions with Phosphoinositides and Cholesterol.Piezo1 与磷酸肌醇和胆固醇形成特定的、具有重要功能的相互作用。
Biophys J. 2020 Oct 20;119(8):1683-1697. doi: 10.1016/j.bpj.2020.07.043. Epub 2020 Sep 2.
4
A high-throughput electrophysiology assay to study the response of PIEZO1 to mechanical stimulation.一种高通量电生理学检测方法,用于研究机械刺激对 PIEZO1 的响应。
J Gen Physiol. 2023 Dec 4;155(12). doi: 10.1085/jgp.202213132. Epub 2023 Oct 6.
5
Chemical activation of the mechanotransduction channel Piezo1.机械转导通道Piezo1的化学激活
Elife. 2015 May 22;4:e07369. doi: 10.7554/eLife.07369.
6
PIEZO1 Ion Channels Mediate Mechanotransduction in Odontoblasts.PIEZO1 离子通道在成牙本质细胞中介导机械转导。
J Endod. 2022 Jun;48(6):749-758. doi: 10.1016/j.joen.2022.02.005. Epub 2022 Feb 25.
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Piezo1 in Digestive System Function and Dysfunction.Piezo1 在消化系统功能和功能障碍中的作用。
Int J Mol Sci. 2023 Aug 19;24(16):12953. doi: 10.3390/ijms241612953.
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Recent advances in the pathophysiology of PIEZO1-related hereditary xerocytosis.PIEZO1 相关性遗传性血红细胞增多症病理生理学的最新进展。
Am J Hematol. 2021 Aug 1;96(8):1017-1026. doi: 10.1002/ajh.26192. Epub 2021 May 3.
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Pharmacology of PIEZO1 channels.PIEZO1 通道的药理学。
Br J Pharmacol. 2024 Dec;181(23):4714-4732. doi: 10.1111/bph.17351. Epub 2024 Oct 14.
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Piezo1 channel: A global bibliometric analysis from 2010 to 2024.Piezo1通道:2010年至2024年的全球文献计量分析
Channels (Austin). 2024 Dec;18(1):2396354. doi: 10.1080/19336950.2024.2396354. Epub 2024 Sep 16.

引用本文的文献

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Brain Capillary Ion Channels: Physiology and Channelopathies.脑微血管离子通道:生理学与通道病
Physiology (Bethesda). 2025 Aug 1. doi: 10.1152/physiol.00015.2025.
2
Protein-induced membrane asymmetry modulates OMP folding kinetics and stability.蛋白质诱导的膜不对称性调节外膜蛋白折叠动力学和稳定性。
Faraday Discuss. 2025 May 8. doi: 10.1039/d4fd00180j.
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Delayed-Onset Muscle Soreness Begins with a Transient Neural Switch.延迟性肌肉酸痛始于短暂的神经转换。
Int J Mol Sci. 2025 Mar 5;26(5):2319. doi: 10.3390/ijms26052319.
4
Phosphatidic acid is an endogenous negative regulator of PIEZO2 channels and mechanical sensitivity.磷脂酸是 PIEZO2 通道和机械敏感性的内源性负调节剂。
Nat Commun. 2024 Aug 15;15(1):7020. doi: 10.1038/s41467-024-51181-4.
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Curvature Footprints of Transmembrane Proteins in Simulations with the Martini Force Field.用 Martini 力场模拟中的跨膜蛋白的曲率足迹。
J Phys Chem B. 2024 Jun 27;128(25):5987-5994. doi: 10.1021/acs.jpcb.4c01385. Epub 2024 Jun 11.
6
Capture of endogenous lipids in peptidiscs and effect on protein stability and activity.肽盘对内源性脂质的捕获及其对蛋白质稳定性和活性的影响。
iScience. 2024 Mar 1;27(4):109382. doi: 10.1016/j.isci.2024.109382. eCollection 2024 Apr 19.
7
Piezo1 and Its Function in Different Blood Cell Lineages.Piezo1 及其在不同血细胞谱系中的功能。
Cells. 2024 Mar 9;13(6):482. doi: 10.3390/cells13060482.
8
Phosphatidic acid is an endogenous negative regulator of PIEZO2 channels and mechanical sensitivity.磷脂酸是PIEZO2通道和机械敏感性的内源性负调节因子。
bioRxiv. 2024 Mar 2:2024.03.01.582964. doi: 10.1101/2024.03.01.582964.
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The Gárdos Channel and Piezo1 Revisited: Comparison between Reticulocytes and Mature Red Blood Cells.再探加德纳斯通道和压电蛋白 1:网织红细胞与成熟红细胞的比较。
Int J Mol Sci. 2024 Jan 24;25(3):1416. doi: 10.3390/ijms25031416.
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Biophysical Reviews: from the umbra of 2020-2021 into the antumbra of 2022.《生物物理评论》:从2020 - 2021年的本影进入2022年的半影。
Biophys Rev. 2022 Feb 23;14(1):3-12. doi: 10.1007/s12551-022-00938-6. eCollection 2022 Feb.

本文引用的文献

1
The anchor domain is critical for Piezo1 channel mechanosensitivity.锚定域对于 Piezo1 通道的机械敏感性至关重要。
Channels (Austin). 2021 Dec;15(1):438-446. doi: 10.1080/19336950.2021.1923199.
2
A bibliometric analysis and review of recent researches on Piezo (2010-2020).压电体(Piezo)近期研究的文献计量分析与综述(2010 - 2020年)
Channels (Austin). 2021 Dec;15(1):310-321. doi: 10.1080/19336950.2021.1893453.
3
Modeling of full-length Piezo1 suggests importance of the proximal N-terminus for dome structure.全长 Piezo1 的建模表明近端 N 端对于穹顶结构的重要性。
Biophys J. 2021 Apr 20;120(8):1343-1356. doi: 10.1016/j.bpj.2021.02.003. Epub 2021 Feb 12.
4
Molecular dynamics simulations of Piezo1 channel opening by increases in membrane tension.细胞膜张力增加导致 Piezo1 通道开放的分子动力学模拟。
Biophys J. 2021 Apr 20;120(8):1510-1521. doi: 10.1016/j.bpj.2021.02.006. Epub 2021 Feb 12.
5
Crowding-induced opening of the mechanosensitive Piezo1 channel in silico.计算模拟中机械敏感性 Piezo1 通道的拥挤诱导开放。
Commun Biol. 2021 Jan 19;4(1):84. doi: 10.1038/s42003-020-01600-1.
6
Discoveries in structure and physiology of mechanically activated ion channels.机械激活离子通道的结构与生理学研究进展
Nature. 2020 Nov;587(7835):567-576. doi: 10.1038/s41586-020-2933-1. Epub 2020 Nov 25.
7
Sphingomyelinase Disables Inactivation in Endogenous PIEZO1 Channels.鞘磷脂酶使内源性 PIEZO1 通道失活。
Cell Rep. 2020 Oct 6;33(1):108225. doi: 10.1016/j.celrep.2020.108225.
8
Piezo1 Forms Specific, Functionally Important Interactions with Phosphoinositides and Cholesterol.Piezo1 与磷酸肌醇和胆固醇形成特定的、具有重要功能的相互作用。
Biophys J. 2020 Oct 20;119(8):1683-1697. doi: 10.1016/j.bpj.2020.07.043. Epub 2020 Sep 2.
9
Disruption of membrane cholesterol organization impairs the activity of PIEZO1 channel clusters.破坏膜胆固醇组织会损害 PIEZO1 通道簇的活性。
J Gen Physiol. 2020 Aug 3;152(8). doi: 10.1085/jgp.201912515.
10
A dietary fatty acid counteracts neuronal mechanical sensitization.膳食脂肪酸可拮抗神经元机械致敏。
Nat Commun. 2020 Jun 19;11(1):2997. doi: 10.1038/s41467-020-16816-2.