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计算模拟中机械敏感性 Piezo1 通道的拥挤诱导开放。

Crowding-induced opening of the mechanosensitive Piezo1 channel in silico.

机构信息

College of Pharmacy, Western University of Health Sciences, Pomona, CA, 91766, USA.

Department of Pharmacology, Physiology and Neuroscience, Rutgers, New Jersey Medical School, Newark, NJ, 07103, USA.

出版信息

Commun Biol. 2021 Jan 19;4(1):84. doi: 10.1038/s42003-020-01600-1.

Abstract

Mechanosensitive Piezo1 channels are essential mechanotransduction proteins in eukaryotes. Their curved transmembrane domains, called arms, create a convex membrane deformation, or footprint, which is predicted to flatten in response to increased membrane tension. Here, using a hyperbolic tangent model, we show that, due to the intrinsic bending rigidity of the membrane, the overlap of neighboring Piezo1 footprints produces a flattening of the Piezo1 footprints and arms. Multiple all-atom molecular dynamics simulations of Piezo1 further reveal that this tension-independent flattening is accompanied by gating motions that open an activation gate in the pore. This open state recapitulates experimentally obtained ionic selectivity, unitary conductance, and mutant phenotypes. Tracking ion permeation along the open pore reveals the presence of intracellular and extracellular fenestrations acting as cation-selective sites. Simulations also reveal multiple potential binding sites for phosphatidylinositol 4,5-bisphosphate. We propose that the overlap of Piezo channel footprints may act as a cooperative mechanism to regulate channel activity.

摘要

机械敏感的 Piezo1 通道是真核生物中重要的机械转导蛋白。它们的弯曲跨膜结构域,称为臂,形成一个凸面的膜变形,或足迹,据预测,在膜张力增加时会变平。在这里,我们使用双曲正切模型表明,由于膜的固有弯曲刚性,相邻 Piezo1 足迹的重叠会导致 Piezo1 足迹和臂的变平。对 Piezo1 的多个全原子分子动力学模拟进一步表明,这种与张力无关的变平伴随着门控运动,在孔中打开激活门。这种开放状态再现了实验获得的离子选择性、单位电导和突变表型。沿着开放的孔追踪离子渗透,揭示了作为阳离子选择性位点的细胞内和细胞外窗格的存在。模拟还揭示了多个潜在的磷脂酰肌醇 4,5-二磷酸结合位点。我们提出,Piezo 通道足迹的重叠可能作为一种协同机制来调节通道活性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c0d2/7815867/84cea6aafed7/42003_2020_1600_Fig1_HTML.jpg

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