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基于网络药理学和分子对接技术揭示鸡血藤抗恶性肿瘤肺转移的潜在机制

Unveiling Potential Mechanisms of Spatholobi Caulis against Lung Metastasis of Malignant Tumor by Network Pharmacology and Molecular Docking.

作者信息

Xie Feiyu, Wang Mina, Su Yixin, Xiao Kunmin, Chu Xuelei, Long Sidan, Li Linlu, Zhang Xin, Xue Peng, Zhu Shijie

机构信息

School of Traditional Chinese Medicine, Beijing University of Chinese Medicine, Beijing 100029, China.

Oncology Department, Wangjing Hospital of China Academy of Chinese Medical Sciences, Beijing 100102, China.

出版信息

Evid Based Complement Alternat Med. 2022 Mar 21;2022:1620539. doi: 10.1155/2022/1620539. eCollection 2022.

Abstract

BACKGROUND

Lung metastasis of malignant tumor signifies worse prognosis and immensely deteriorates patients' life quality. Spatholobi Caulis (SC) has been reported to reduce lung metastasis, but the mechanism remains elusive.

METHODS

The active components and corresponding targets of SC were obtained from the Traditional Chinese Medicine Database and Analysis Platform (TCMSP) database and the SwissTargetPrediction database. The disease targets were acquired from DisGeNET and GeneCards databases. Venn map was composed to figure out intersection targets by using R. The PPI network was constructed through STRING and Cytoscape, and MCODE plug-in was used to sift hub targets. Gene Ontology (GO)-Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis was carried out by utilizing clusterProfiler package (R3.6.1) with adjusted value <0.05. Network of SC-active components-intersection targets-KEGG pathway was accomplished with Cytoscape. Molecular docking between hub targets and active components was performed, analyzed, and visualized by AutoDockTools, AutoDock Vina, PLIP Web tool, and PYMOL.

RESULTS

24 active components and 123 corresponding targets were screened, and the number of disease targets and intersection targets was 1074 and 47, respectively. RELA, JUN, MAPK1, MAPK14, STAT3, IL-4, ESR1, and TP53 were the 8 hub targets. GO analysis and KEGG analysis elucidated that SC could ameliorate lung metastasis mainly by intervening oxidative stress, AGE-RAGE signaling pathway, and microRNAs in cancer. All 8 hub targets were proven to combine successfully with active components of SC.

CONCLUSION

Inflammation is the core factor that integrates all these targets, biological process, and signaling pathways, which indicates that SC prevents or reduces lung metastasis mainly by dispelling inflammation.

摘要

背景

恶性肿瘤的肺转移意味着预后较差,并极大地恶化患者的生活质量。据报道,鸡血藤可减少肺转移,但其机制仍不清楚。

方法

从中药系统药理学数据库与分析平台(TCMSP)数据库和瑞士靶点预测数据库中获取鸡血藤的活性成分及相应靶点。疾病靶点从DisGeNET和GeneCards数据库中获取。使用R绘制韦恩图以找出交集靶点。通过STRING和Cytoscape构建蛋白质-蛋白质相互作用(PPI)网络,并使用MCODE插件筛选枢纽靶点。利用clusterProfiler包(R3.6.1)进行基因本体(GO)-京都基因与基因组百科全书(KEGG)富集分析,调整后的P值<0.05。用Cytoscape完成鸡血藤活性成分-交集靶点-KEGG通路网络。通过AutoDockTools、AutoDock Vina、PLIP网络工具和PYMOL对枢纽靶点与活性成分之间进行分子对接、分析和可视化。

结果

筛选出24种活性成分和123个相应靶点,疾病靶点和交集靶点的数量分别为1074个和47个。RELA、JUN、MAPK1、MAPK14、STAT3、IL-4、ESR1和TP53为8个枢纽靶点。GO分析和KEGG分析表明,鸡血藤可主要通过干预氧化应激、晚期糖基化终产物受体(AGE-RAGE)信号通路和癌症中的微小RNA来改善肺转移。所有8个枢纽靶点均被证明与鸡血藤的活性成分成功结合。

结论

炎症是整合所有这些靶点、生物学过程和信号通路的核心因素,这表明鸡血藤主要通过消除炎症来预防或减少肺转移。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/011a/8959948/2867022b003d/ECAM2022-1620539.001.jpg

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