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基于网络药理学和分子对接验证鉴定蒺藜治疗放射性肺损伤的活性成分及药理机制

Identifying Active Substances and the Pharmacological Mechanism of Thunb. in Treating Radiation-Induced Lung Injury Based on Network Pharmacology and Molecular Docking Verification.

作者信息

Lai Gui-Hua, Wang Fei, Nie Duo-Rui, Lei Shu-Jun, Wu Zhuo-Jun, Cao Jian-Xiong

机构信息

Graduate School, Hunan University of Chinese Medicine, Changsha, Hunan 410208, China.

School of Continuing Education, Hunan University of Chinese Medicine, Changsha, Hunan 410208, China.

出版信息

Evid Based Complement Alternat Med. 2022 Mar 22;2022:3776340. doi: 10.1155/2022/3776340. eCollection 2022.

Abstract

BACKGROUND

Thunb. is a traditional Chinese herb widely used mainly because of the pharmacological effects related to heat clearance and detoxification. Emerging clinical evidence indicates that the efficacy of Thunb. on RILI is upstanding. Nevertheless, its underlying therapeutic mechanism remains unclear and warrants further elucidation.

METHODS

The major active components and corresponding targets of Thunb. were retrieved from the traditional Chinese medicine system pharmacology database (TCMSP) and literature review. The related targets of RILI were retrieved from the GeneCards database. Common targets among the active compounds and diseases were identified through Venn diagram analysis. Cytoscape was employed to construct and visualize the network relationship among the drug, active compounds, targets, and disease. The protein interaction network (PPI) was constructed by STRING. The reliability (the binding affinity) of the core targets and active compounds was verified by molecular docking.

RESULTS

A search of the TCMSP database and related literature revealed 12 active compounds of Thunb. against RILI. The core active compounds included quercetin, kaempferol, hyperoside, and rutin. Hub nodes including TP53, VEGFA, JUN, TNF, and IL-6 were identified in the PPI network. The GO categories were classified into three functional categories: 112 biological processes, 9 molecular functions, and 32 cellular components of the active compounds of Thunb. The KEGG pathway enrichment analysis demonstrated the enrichment of target genes in several key cancer-related signaling pathways, including the cancer pathways, TNF signaling pathway, PI3K-Akt signaling pathway, and HIF-1 signaling pathway. Molecular docking analysis validated the effective binding capacity of the main active compounds with the core targets.

CONCLUSION

The main active components of Thunb. have a potential pharmacological effect against RILI via the cancer pathways, TNF signaling pathway, and PI3K-Akt signaling pathway.

摘要

背景

土牛膝是一种广泛应用的传统中药,主要因其清热排毒的药理作用。新出现的临床证据表明,土牛膝对放射性肺损伤的疗效显著。然而,其潜在的治疗机制仍不清楚,值得进一步阐明。

方法

从中药系统药理学数据库(TCMSP)和文献综述中检索土牛膝的主要活性成分和相应靶点。从GeneCards数据库中检索放射性肺损伤的相关靶点。通过维恩图分析确定活性化合物和疾病之间的共同靶点。利用Cytoscape构建并可视化药物、活性化合物、靶点和疾病之间的网络关系。通过STRING构建蛋白质相互作用网络(PPI)。通过分子对接验证核心靶点和活性化合物的可靠性(结合亲和力)。

结果

对TCMSP数据库和相关文献的检索显示,土牛膝有12种活性化合物对放射性肺损伤有作用。核心活性化合物包括槲皮素、山奈酚、金丝桃苷和芦丁。在PPI网络中鉴定出包括TP53、VEGFA、JUN、TNF和IL-6在内的枢纽节点。基因本体(GO)类别分为三个功能类别:土牛膝活性化合物的112个生物过程、9个分子功能和32个细胞成分。京都基因与基因组百科全书(KEGG)通路富集分析表明,靶基因在几个关键的癌症相关信号通路中富集,包括癌症通路、TNF信号通路、PI3K-Akt信号通路和HIF-1信号通路。分子对接分析验证了主要活性化合物与核心靶点的有效结合能力。

结论

土牛膝的主要活性成分通过癌症通路、TNF信号通路和PI3K-Akt信号通路对放射性肺损伤具有潜在的药理作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/035c/8964154/f981a1425df3/ECAM2022-3776340.001.jpg

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