SneakerNet：一种用于初级基因组和宏基因组读取数据的模块化质量保证和质量检查工作流程。
SneakerNet: A modular quality assurance and quality check workflow for primary genomic and metagenomic read data.
作者信息
Griswold Taylor, Kapsak Curtis, Chen Jessica C, den Bakker Henk C, Williams Grant, Kelley Alyssa, Vidyaprakash Eshaw, Katz Lee S
机构信息
Enteric Diseases Laboratory Branch (EDLB), Centers for Disease Control and Prevention, Atlanta, GA, USA.
Weems Design Studio, Inc., Suwanee, GA, USA.
出版信息
J Open Source Softw. 2021 Apr 16;6(60). doi: 10.21105/joss.02334.
Abstract
Laboratories that run Whole Genome Sequencing (WGS) produce a tremendous amount of data, up to 10 gigabytes for some common instruments. There is a need to standardize the quality assurance and quality control process (QA/QC). Therefore we have created SneakerNet to automate the QA/QC for WGS.
摘要
进行全基因组测序（WGS）的实验室会产生大量数据，一些常见仪器的数据量可达10GB。因此，有必要对质量保证和质量控制流程（QA/QC）进行标准化。为此，我们创建了SneakerNet来实现WGS的QA/QC自动化。
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