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利用 FullMonte 和 PDT-SPACE 实现可扩展和可及的个性化光动力疗法优化。

Scalable and accessible personalized photodynamic therapy optimization with FullMonte and PDT-SPACE.

机构信息

University of Toronto, Edward S. Rogers Sr. Department of Electrical and Computer Engineering, Toron, Canada.

University of Toronto, Department of Medical Biophysics, Toronto, Ontario, Canada.

出版信息

J Biomed Opt. 2022 Apr;27(8). doi: 10.1117/1.JBO.27.8.083006.

Abstract

SIGNIFICANCE

Open-source software packages have been extensively used in the past three decades in medical imaging and diagnostics, aiming to study the feasibility of the application ex vivo. Unfortunately, most of the existing open-source tools require some software engineering background to install the prerequisite libraries, choose a suitable computational platform, and combine several software tools to address different applications.

AIM

To facilitate the use of open-source software in medical applications, enabling computational studies of treatment outcomes prior to the complex in-vivo setting.

APPROACH

FullMonteWeb, an open-source, user-friendly web-based software with a graphical user interface for interstitial photodynamic therapy (iPDT) modeling, visualization, and optimization, is introduced. The software can perform Monte Carlo simulations of light propagation in biological tissues, along with iPDT plan optimization. FullMonteWeb installs and runs the required software and libraries on Amazon Web Services (AWS), allowing scalable computing without complex set up.

RESULTS

FullMonteWeb allows simulation of large and small problems on the most appropriate compute hardware, enabling cost improvements of 10  ×   versus always running on a single platform. Case studies in optical property estimation and diffuser placement optimization highlight FullMonteWeb's versatility.

CONCLUSION

The FullMonte open source suite enables easier and more cost-effective in-silico studies for iPDT.

摘要

意义

在过去的三十年中,开源软件包已广泛应用于医学成像和诊断领域,旨在研究其在体外应用的可行性。不幸的是,大多数现有的开源工具都需要一些软件工程背景才能安装必要的库、选择合适的计算平台,并结合使用多个软件工具来满足不同的应用需求。

目的

为了方便在医学应用中使用开源软件,以便在复杂的体内环境之前对治疗效果进行计算研究。

方法

介绍了一种名为 FullMonteWeb 的开源、用户友好的基于网络的软件,它具有用于间质光动力疗法 (iPDT) 建模、可视化和优化的图形用户界面。该软件可以进行生物组织中光传播的蒙特卡罗模拟,以及 iPDT 计划优化。FullMonteWeb 在亚马逊网络服务 (AWS) 上安装和运行所需的软件和库,从而实现可扩展的计算,而无需进行复杂的设置。

结果

FullMonteWeb 允许在最合适的计算硬件上模拟大型和小型问题,从而实现成本降低 10 倍,而不是始终在单个平台上运行。在光学特性估计和扩散器放置优化方面的案例研究突出了 FullMonteWeb 的多功能性。

结论

FullMonte 开源套件使 iPDT 的更简单、更具成本效益的计算研究成为可能。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aae6/8978262/7f9d45de25ba/JBO-027-083006-g001.jpg

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