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1 类主要组织相容性复合物限制的九肽与 T 细胞受体结合的结构模式。

Structural patterns in class 1 major histocompatibility complex-restricted nonamer peptide binding to T-cell receptors.

机构信息

Department of Biochemistry and Cellular and Molecular Biology, University of Tennessee, Knoxville, Tennessee, USA.

UT/ORNL Center for Molecular Biophysics, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.

出版信息

Proteins. 2022 Sep;90(9):1645-1654. doi: 10.1002/prot.26343. Epub 2022 Apr 22.

Abstract

The startling diversity in αβ T-cell receptor (TCR) sequences and structures complicates molecular-level analyses of the specificity and sensitivity determining T-cell immunogenicity. A number of three-dimensional (3D) structures are now available of ternary complexes between TCRs and peptides: major histocompatibility complexes (pMHC). Here, to glean molecular-level insights we analyze structures of TCRs bound to human class I nonamer peptide-MHC complexes. Residues at peptide positions 4-8 are found to be particularly important for TCR binding. About 90% of the TCRs hydrogen bond with one or both of the peptide residues at positions 4 and 8 presented by MHC allele HLA-A2, and this number is still ~79% for peptides presented by other MHC alleles. Residue 8, which lies outside the previously-identified central peptide region, is crucial for TCR recognition of class I MHC-presented nonamer peptides. The statistics of the interactions also sheds light on the MHC residues important for TCR binding. The present analysis will aid in the structural modeling of TCR:pMHC complexes and has implications for the rational design of peptide-based vaccines and T-cell-based immunotherapies.

摘要

αβ T 细胞受体 (TCR) 序列和结构的惊人多样性,使得对决定 T 细胞免疫原性的特异性和敏感性的分子水平分析变得复杂。现在已经有许多 TCR 与肽:主要组织相容性复合物 (pMHC) 之间的三元复合物的三维 (3D) 结构。在这里,为了深入了解分子水平,我们分析了与人类 I 类九聚体肽 MHC 复合物结合的 TCR 结构。发现肽位置 4-8 的残基对 TCR 结合特别重要。约 90%的 TCR 与 MHC 等位基因 HLA-A2 呈递的肽位置 4 和 8 的一个或两个肽残基形成氢键,对于其他 MHC 等位基因呈递的肽,这个数字仍约为 79%。位于先前确定的中央肽区域之外的残基 8 对于 TCR 识别 I 类 MHC 呈递的九聚体肽至关重要。相互作用的统计数据也揭示了对 TCR 结合重要的 MHC 残基。目前的分析将有助于 TCR:pMHC 复合物的结构建模,并对基于肽的疫苗和基于 T 细胞的免疫疗法的合理设计具有重要意义。

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