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通过测试时训练从合成CT图像中学习以进行肝脏肿瘤分割

Learning From Synthetic CT Images via Test-Time Training for Liver Tumor Segmentation.

作者信息

Lyu Fei, Ye Mang, Ma Andy J, Yip Terry Cheuk-Fung, Wong Grace Lai-Hung, Yuen Pong C

出版信息

IEEE Trans Med Imaging. 2022 Sep;41(9):2510-2520. doi: 10.1109/TMI.2022.3166230. Epub 2022 Aug 31.

DOI:10.1109/TMI.2022.3166230
PMID:35404812
Abstract

Automatic liver tumor segmentation could offer assistance to radiologists in liver tumor diagnosis, and its performance has been significantly improved by recent deep learning based methods. These methods rely on large-scale well-annotated training datasets, but collecting such datasets is time-consuming and labor-intensive, which could hinder their performance in practical situations. Learning from synthetic data is an encouraging solution to address this problem. In our task, synthetic tumors can be injected to healthy images to form training pairs. However, directly applying the model trained using the synthetic tumor images on real test images performs poorly due to the domain shift problem. In this paper, we propose a novel approach, namely Synthetic-to-Real Test-Time Training (SR-TTT), to reduce the domain gap between synthetic training images and real test images. Specifically, we add a self-supervised auxiliary task, i.e., two-step reconstruction, which takes the output of the main segmentation task as its input to build an explicit connection between these two tasks. Moreover, we design a scheduled mixture strategy to avoid error accumulation and bias explosion in the training process. During test time, we adapt the segmentation model to each test image with self-supervision from the auxiliary task so as to improve the inference performance. The proposed method is extensively evaluated on two public datasets for liver tumor segmentation. The experimental results demonstrate that our proposed SR-TTT can effectively mitigate the synthetic-to-real domain shift problem in the liver tumor segmentation task, and is superior to existing state-of-the-art approaches.

摘要

自动肝脏肿瘤分割可为放射科医生进行肝脏肿瘤诊断提供帮助,并且基于深度学习的方法已显著提升了其性能。这些方法依赖大规模标注良好的训练数据集,但收集此类数据集既耗时又费力,这可能会阻碍它们在实际应用中的性能表现。从合成数据中学习是解决这一问题的一个令人鼓舞的办法。在我们的任务中,可以将合成肿瘤注入到健康图像中以形成训练对。然而,由于域偏移问题,直接将使用合成肿瘤图像训练的模型应用于真实测试图像时,性能表现不佳。在本文中,我们提出了一种新颖的方法,即合成到真实测试时训练(SR-TTT),以缩小合成训练图像与真实测试图像之间的域差距。具体而言,我们添加了一个自监督辅助任务,即两步重建,它将主分割任务的输出作为其输入,以在这两个任务之间建立明确的联系。此外,我们设计了一种调度混合策略,以避免训练过程中的误差累积和偏差爆炸。在测试时,我们利用辅助任务的自监督使分割模型适应每个测试图像,从而提高推理性能。我们所提出的方法在两个用于肝脏肿瘤分割的公共数据集上进行了广泛评估。实验结果表明,我们提出的SR-TTT能够有效缓解肝脏肿瘤分割任务中的合成到真实域偏移问题,并且优于现有的最先进方法。

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