College of Life Sciences and Chemistry, Hunan University of Technology, Zhuzhou 412007, China.
National Engineering Research Center of Rice and Byproduct Deep Processing, College of Food Science and Engineering, Central South University of Forestry and Technology, Changsha 410004, China.
Cells. 2022 Apr 4;11(7):1220. doi: 10.3390/cells11071220.
Lung adenocarcinoma (LUAD) is the leading cause of cancer deaths worldwide, and effective biomarkers are still lacking for early detection and prognosis prediction. Here, based on gene expression profiles of LUAD patients from The Cancer Genome Atlas (TCGA), 806 long non-coding RNAs (lncRNAs), 122 microRNAs (miRNAs) and 1269 mRNAs associated with CDK1 were identified. The regulatory axis of LINC00460/LINC00525-hsa-mir-338-FAM111B/ZWINT was determined according to the correlation between gene expression and patient prognosis. The abnormal up-regulation of FAM111B/ZWINT in LUAD was related to hypomethylation. Furthermore, immune infiltration analysis suggested FAM111B/ZWINT could affect the development and prognosis of cancer by regulating the LUAD immune microenvironment. EMT feature analysis suggested that FAM111B/ZWINT promoted tumor spread through the EMT process. Functional analysis showed FAM111B/ZWINT was involved in cell cycle events such as DNA replication and chromosome separation. We analyzed the HERB and GSCALite databases to identify potential target medicines that may play a role in the treatment of LUAD. Finally, the expression of LINC00460/LINC00525-hsa-mir-338-FAM111B/ZWINT axis was verified in LUAD cells by RT-qPCR, and these results were consistent with bioinformatics analysis. Overall, we constructed a CDK1-related ceRNA network and revealed the LINC00460/LINC00525-hsa-mir-338-FAM111/ZWINT pathways as potential diagnostic biomarkers or therapeutic targets of LUAD.
肺腺癌 (LUAD) 是全球癌症死亡的主要原因,目前仍然缺乏有效的生物标志物用于早期检测和预后预测。在这里,基于癌症基因组图谱 (TCGA) 中 LUAD 患者的基因表达谱,鉴定出了 806 个长非编码 RNA (lncRNA)、122 个 microRNA (miRNA) 和 1269 个与 CDK1 相关的 mRNA。根据基因表达与患者预后的相关性,确定了 LINC00460/LINC00525-hsa-mir-338-FAM111B/ZWINT 的调控轴。LUAD 中 FAM111B/ZWINT 的异常上调与低甲基化有关。此外,免疫浸润分析表明,FAM111B/ZWINT 通过调节 LUAD 免疫微环境影响癌症的发生和预后。EMT 特征分析表明,FAM111B/ZWINT 通过 EMT 过程促进肿瘤扩散。功能分析表明,FAM111B/ZWINT 参与了细胞周期事件,如 DNA 复制和染色体分离。我们分析了 HERB 和 GSCALite 数据库,以确定可能在 LUAD 治疗中发挥作用的潜在靶向药物。最后,通过 RT-qPCR 验证了 LUAD 细胞中 LINC00460/LINC00525-hsa-mir-338-FAM111B/ZWINT 轴的表达,这些结果与生物信息学分析一致。总的来说,我们构建了一个 CDK1 相关的 ceRNA 网络,并揭示了 LINC00460/LINC00525-hsa-mir-338-FAM111B/ZWINT 通路可能作为 LUAD 的潜在诊断生物标志物或治疗靶点。