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基于克里特花粉数据集上的集成迁移学习的花粉粒分类

Pollen Grain Classification Based on Ensemble Transfer Learning on the Cretan Pollen Dataset.

作者信息

Tsiknakis Nikos, Savvidaki Elisavet, Manikis Georgios C, Gotsiou Panagiota, Remoundou Ilektra, Marias Kostas, Alissandrakis Eleftherios, Vidakis Nikolas

机构信息

Computational Biomedicine Laboratory, Institute of Computer Science, Foundation for Research and Technology Hellas-FORTH, 70013 Heraklion, Greece.

Department of Agriculture, Hellenic Mediterranean University, 71004 Heraklion, Greece.

出版信息

Plants (Basel). 2022 Mar 29;11(7):919. doi: 10.3390/plants11070919.

DOI:10.3390/plants11070919
PMID:35406899
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9002917/
Abstract

Pollen identification is an important task for the botanical certification of honey. It is performed via thorough microscopic examination of the pollen present in honey; a process called melissopalynology. However, manual examination of the images is hard, time-consuming and subject to inter- and intra-observer variability. In this study, we investigated the applicability of deep learning models for the classification of pollen-grain images into 20 pollen types, based on the Cretan Pollen Dataset. In particular, we applied transfer and ensemble learning methods to achieve an accuracy of 97.5%, a sensitivity of 96.9%, a precision of 97%, an F1 score of 96.89% and an AUC of 0.9995. However, in a preliminary case study, when we applied the best-performing model on honey-based pollen-grain images, we found that it performed poorly; only 0.02 better than random guessing (i.e., an AUC of 0.52). This indicates that the model should be further fine-tuned on honey-based pollen-grain images to increase its effectiveness on such data.

摘要

花粉鉴定是蜂蜜植物学认证的一项重要任务。它通过对蜂蜜中存在的花粉进行全面的显微镜检查来完成;这个过程称为蜂蜜花粉学。然而,人工检查图像既困难又耗时,并且存在观察者间和观察者内的变异性。在本研究中,我们基于克里特岛花粉数据集,研究了深度学习模型对花粉粒图像进行20种花粉类型分类的适用性。特别是,我们应用迁移学习和集成学习方法,实现了97.5%的准确率、96.9%的灵敏度、97%的精确率、96.89%的F1分数和0.9995的AUC。然而,在一个初步的案例研究中,当我们将性能最佳的模型应用于基于蜂蜜的花粉粒图像时,我们发现它的表现很差;仅比随机猜测好0.02(即AUC为0.52)。这表明该模型应在基于蜂蜜的花粉粒图像上进一步微调,以提高其在此类数据上的有效性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f5ee/9002917/8aafeecfc05f/plants-11-00919-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f5ee/9002917/a9209c11a5a7/plants-11-00919-g001.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f5ee/9002917/4e8de49cad5a/plants-11-00919-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f5ee/9002917/300ea084c56c/plants-11-00919-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f5ee/9002917/3cca1cecd0b9/plants-11-00919-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f5ee/9002917/bdc9038928e6/plants-11-00919-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f5ee/9002917/ba6e7daa0f8a/plants-11-00919-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f5ee/9002917/602f6463de48/plants-11-00919-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f5ee/9002917/8aafeecfc05f/plants-11-00919-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f5ee/9002917/a9209c11a5a7/plants-11-00919-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f5ee/9002917/53ec97821ec3/plants-11-00919-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f5ee/9002917/4e8de49cad5a/plants-11-00919-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f5ee/9002917/300ea084c56c/plants-11-00919-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f5ee/9002917/3cca1cecd0b9/plants-11-00919-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f5ee/9002917/bdc9038928e6/plants-11-00919-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f5ee/9002917/ba6e7daa0f8a/plants-11-00919-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f5ee/9002917/602f6463de48/plants-11-00919-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f5ee/9002917/8aafeecfc05f/plants-11-00919-g009.jpg

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PLoS One. 2016 Jun 8;11(6):e0157044. doi: 10.1371/journal.pone.0157044. eCollection 2016.