Computational and Chemical Biology, Istituto Italiano di Tecnologia, Via Morego 30, 16163 Genova, Italy.
Department of Pharmacy and Biotechnology, University of Bologna, Via Belmeloro 6, 40126 Bologna, Italy.
Int J Mol Sci. 2022 Mar 31;23(7):3856. doi: 10.3390/ijms23073856.
Glycogen synthase kinase 3 beta (GSK-3β) is an evolutionarily conserved serine-threonine kinase dysregulated in numerous pathologies, such as Alzheimer's disease and cancer. Even though GSK-3β is a validated pharmacological target most of its inhibitors have two main limitations: the lack of selectivity due to the high homology that characterizes the ATP binding site of most kinases, and the toxicity that emerges from GSK-3β complete inhibition which translates into the impairment of the plethora of pathways GSK-3β is involved in. Starting from a 1D F NMR fragment screening, we set up several biophysical assays for the identification of GSK-3β inhibitors capable of binding protein hotspots other than the ATP binding pocket or to the ATP binding pocket, but with an affinity able of competing with a reference binder. A phosphorylation activity assay on a panel of several kinases provided selectivity data that were further rationalized and corroborated by structural information on GSK-3β in complex with the hit compounds. In this study, we identified promising fragments, inhibitors of GSK-3β, while proposing an alternative screening workflow that allows facing the flaws that characterize the most common GSK-3β inhibitors through the identification of selective inhibitors and/or inhibitors able to modulate GSK-3β activity without leading to its complete inhibition.
糖原合酶激酶 3β(GSK-3β)是一种进化上保守的丝氨酸/苏氨酸激酶,在许多病理学中失调,如阿尔茨海默病和癌症。尽管 GSK-3β 是一个经过验证的药理学靶点,但它的大多数抑制剂都有两个主要的局限性:由于大多数激酶的 ATP 结合位点具有高度同源性,缺乏选择性,以及 GSK-3β 完全抑制所产生的毒性,这会导致 GSK-3β 参与的众多途径受损。从一维 F NMR 片段筛选开始,我们建立了几个生物物理测定法,用于鉴定能够结合除 ATP 结合口袋以外的蛋白质热点或结合到 ATP 结合口袋的 GSK-3β 抑制剂,但亲和力能够与参考配体竞争。对一系列激酶的磷酸化活性测定提供了选择性数据,这些数据通过与命中化合物结合的 GSK-3β 的结构信息进一步合理化和证实。在这项研究中,我们确定了有前途的片段,GSK-3β 的抑制剂,同时提出了一种替代筛选工作流程,通过鉴定选择性抑制剂和/或能够调节 GSK-3β 活性而不导致其完全抑制的抑制剂来解决最常见的 GSK-3β 抑制剂的缺陷。