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利用竞争生物物理测定法鉴定新型 GSK-3β 作用物。

Identification of Novel GSK-3β Hits Using Competitive Biophysical Assays.

机构信息

Computational and Chemical Biology, Istituto Italiano di Tecnologia, Via Morego 30, 16163 Genova, Italy.

Department of Pharmacy and Biotechnology, University of Bologna, Via Belmeloro 6, 40126 Bologna, Italy.

出版信息

Int J Mol Sci. 2022 Mar 31;23(7):3856. doi: 10.3390/ijms23073856.

Abstract

Glycogen synthase kinase 3 beta (GSK-3β) is an evolutionarily conserved serine-threonine kinase dysregulated in numerous pathologies, such as Alzheimer's disease and cancer. Even though GSK-3β is a validated pharmacological target most of its inhibitors have two main limitations: the lack of selectivity due to the high homology that characterizes the ATP binding site of most kinases, and the toxicity that emerges from GSK-3β complete inhibition which translates into the impairment of the plethora of pathways GSK-3β is involved in. Starting from a 1D F NMR fragment screening, we set up several biophysical assays for the identification of GSK-3β inhibitors capable of binding protein hotspots other than the ATP binding pocket or to the ATP binding pocket, but with an affinity able of competing with a reference binder. A phosphorylation activity assay on a panel of several kinases provided selectivity data that were further rationalized and corroborated by structural information on GSK-3β in complex with the hit compounds. In this study, we identified promising fragments, inhibitors of GSK-3β, while proposing an alternative screening workflow that allows facing the flaws that characterize the most common GSK-3β inhibitors through the identification of selective inhibitors and/or inhibitors able to modulate GSK-3β activity without leading to its complete inhibition.

摘要

糖原合酶激酶 3β(GSK-3β)是一种进化上保守的丝氨酸/苏氨酸激酶,在许多病理学中失调,如阿尔茨海默病和癌症。尽管 GSK-3β 是一个经过验证的药理学靶点,但它的大多数抑制剂都有两个主要的局限性:由于大多数激酶的 ATP 结合位点具有高度同源性,缺乏选择性,以及 GSK-3β 完全抑制所产生的毒性,这会导致 GSK-3β 参与的众多途径受损。从一维 F NMR 片段筛选开始,我们建立了几个生物物理测定法,用于鉴定能够结合除 ATP 结合口袋以外的蛋白质热点或结合到 ATP 结合口袋的 GSK-3β 抑制剂,但亲和力能够与参考配体竞争。对一系列激酶的磷酸化活性测定提供了选择性数据,这些数据通过与命中化合物结合的 GSK-3β 的结构信息进一步合理化和证实。在这项研究中,我们确定了有前途的片段,GSK-3β 的抑制剂,同时提出了一种替代筛选工作流程,通过鉴定选择性抑制剂和/或能够调节 GSK-3β 活性而不导致其完全抑制的抑制剂来解决最常见的 GSK-3β 抑制剂的缺陷。

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