Computational and Chemical Biology, Istituto Italiano di Tecnologia, Via Morego 30, 16163 Genoa, Italy.
Computational mOdelling of NanosCalE and bioPhysical sysTems (CONCEPT) Lab, Istituto Italiano di Tecnologia, Via Enrico Melen 83, 16152 Genoa, Italy.
Int J Mol Sci. 2023 Apr 19;24(8):7541. doi: 10.3390/ijms24087541.
Most kinase inhibitors are designed to bind to highly homologous ATP-binding sites, which leads to promiscuity and possible off-target effects. Allostery is an alternative approach to pursuing selectivity. However, allostery is difficult to exploit due to the wide variety of underlying mechanisms and the potential involvement of long-range conformational effects that are difficult to pinpoint. GSK-3β is involved in several pathologies. This critical target has an ATP-binding site that is highly homologous with the orthosteric sites of other kinases. Unsurprisingly, there is also great similarity between the ATP-binding sites of GSK-3β and its isomer, which is not redundant and thus would benefit from selective inhibition. Allostery would also allow for a moderate and tunable inhibition, which is ideal for GSK-3β, because this target is involved in multiple pathways, some of which must be preserved. However, despite considerable research efforts, only one allosteric GSK-3β inhibitor has reached the clinic. Moreover, unlike other kinases, there are no X-ray structures of GSK-3β in complex with allosteric inhibitors in the PDB data bank. This review aims to summarize the state of the art in allosteric GSK-3β inhibitor investigations, highlighting the aspects that make this target challenging for an allosteric approach.
大多数激酶抑制剂的设计目的是与高度同源的 ATP 结合位点结合,这导致了混杂性和可能的脱靶效应。变构作用是一种追求选择性的替代方法。然而,由于潜在机制的多样性和难以精确定位的长程构象效应的潜在参与,变构作用很难被利用。GSK-3β 参与多种病理。这个关键靶点有一个 ATP 结合位点,与其他激酶的正位结合位点高度同源。毫不奇怪,GSK-3β 和其异构体的 ATP 结合位点之间也有很大的相似性,后者不是冗余的,因此受益于选择性抑制。变构作用也可以允许适度和可调的抑制,这对 GSK-3β 来说是理想的,因为这个靶点涉及多个途径,其中一些途径必须保留。然而,尽管进行了大量的研究工作,只有一种变构 GSK-3β 抑制剂进入了临床阶段。此外,与其他激酶不同,PDB 数据库中没有 GSK-3β 与变构抑制剂结合的 X 射线结构。这篇综述旨在总结变构 GSK-3β 抑制剂研究的最新进展,强调使这个靶点对变构方法具有挑战性的方面。