Zuo Rong, Xie Meili, Gao Feng, Sumbal Wahid, Cheng Xiaohui, Liu Yueying, Bai Zetao, Liu Shengyi
Key Laboratory of Biology and Genetics Improvement of Oil Crops, Oil Crops Research Institute of Chinese Academy of Agricultural Sciences, Ministry of Agriculture and Rural Affairs, Wuhan 430062, China.
Int J Mol Sci. 2022 Apr 1;23(7):3934. doi: 10.3390/ijms23073934.
In plants, phloem is not only a vital structure that is used for nutrient transportation, but it is also the location of a response that defends against various stresses, named phloem-based defense (PBD). Phloem proteins (PP2s) are among the predominant proteins in phloem, indicating their potential functional role in PBD. Sclerotinia disease (SD), which is caused by the necrotrophic fungal pathogen , is a devastating disease that affects oil crops, especially mainly by blocking nutrition and water transportation through xylem and phloem. Presently, the role of in SD resistance is still largely estimated. Therefore, in this study, we identified 62 members of the gene family in the genome with an uneven distribution across the 19 chromosomes. A phylogenetic analysis classified the into four clusters (I-IV), with cluster I containing the most members (28 genes) as a consequence of its frequent genome segmental duplication. A comparison of the gene structures and conserved motifs suggested that genes were well conserved in clusters II to IV, but were variable in cluster I. Interestingly, the motifs in different clusters displayed unique features, such as motif 6 specifically existing in cluster III and motif 1 being excluded from cluster IV. These results indicated the possible functional specification of A transcriptome data analysis showed that the genes in clusters II to IV exhibited dynamic expression alternation in tissues and the stimulation of , suggesting that they could participate in SD resistance. A GWAS analysis of a rapeseed population comprising 324 accessions identified four genes that were potentially responsible for SD resistance and a transgenic study that was conducted by transiently expressing in tobacco () leaves validated their positive role in regulating SD resistance in terms of reduced lesion size after inoculation with hyphal plugs. This study provides useful information on gene functions in and could aid elaborated functional studies on the gene family.
在植物中,韧皮部不仅是用于营养物质运输的重要结构,也是抵御各种胁迫反应的发生部位,这种反应被称为基于韧皮部的防御(PBD)。韧皮部蛋白(PP2s)是韧皮部中的主要蛋白质之一,表明它们在PBD中可能具有功能性作用。由坏死营养型真菌病原体引起的菌核病(SD)是一种毁灭性疾病,影响油料作物,尤其是主要通过阻断木质部和韧皮部的营养和水分运输。目前,其在抗SD中的作用仍很大程度上未知。因此,在本研究中,我们在油菜基因组中鉴定出62个该基因家族成员,它们在19条染色体上分布不均。系统发育分析将该基因家族分为四个簇(I - IV),由于其频繁的基因组片段重复,簇I包含的成员最多(28个基因)。基因结构和保守基序的比较表明,该基因在簇II至IV中保守性良好,但在簇I中存在变异。有趣的是,不同簇中的基序表现出独特特征,例如基序6特异性存在于簇III中,而基序1在簇IV中不存在。这些结果表明该基因家族可能存在功能特化。转录组数据分析表明,簇II至IV中的基因在组织中以及菌核病菌刺激下表现出动态表达变化,表明它们可能参与抗SD。对包含324份材料的油菜群体进行全基因组关联研究(GWAS),鉴定出四个可能负责抗SD的该基因,并且通过在烟草叶片中瞬时表达该基因进行的转基因研究验证了它们在接种菌核病菌丝块后减小病斑大小方面对调节抗SD的积极作用。本研究提供了关于油菜中该基因功能的有用信息,并有助于对该基因家族进行详细的功能研究。