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首例感染[具体对象]的噬荚膜菌噬菌体的特性及基因组分析,代表一个新的病毒簇

Characterization and Genomic Analysis of the First Podophage Infecting , Representing a Novel Viral Cluster.

作者信息

Dong Yue, Zheng Kaiyang, Zou Xiao, Liang Yantao, Liu Yundan, Li Xiang, Shao Hongbing, Sung Yeong Yik, Mok Wen Jye, Wong Li Lian, McMinn Andrew, Wang Min

机构信息

College of Marine Life Sciences, Institute of Evolution and Marine Biodiversity, Frontiers Science Center for Deep Ocean Multispheres and Earth System, Key Lab of Polar Oceanography and Global Ocean Change, Ocean University of China, Qingdao, China.

Qingdao Central Hospital, Qingdao, China.

出版信息

Front Microbiol. 2022 Apr 1;13:853973. doi: 10.3389/fmicb.2022.853973. eCollection 2022.

Abstract

is a common bacterial genus in marine sediments and deep seas, with a variety of metabolic abilities, suggesting its important roles in the marine biogeochemical cycles. In this study, a novel lytic Shewanella phage, vB_SInP-X14, was isolated from the surface coastal waters of Qingdao, China. The vB_SInP-X14 contains a linear, double-strand 36,396-bp with the G + C content of 44.1% and harbors 40 predicted open reading frames. Morphological, growth, and genomic analysis showed that it is the first isolated podovirus infecting , with a short propagation time (40 min), which might be resulted from three lytic-related genes. Phylogenetic analysis suggested that vB_SInP-X14 could represent a novel viral genus, named Bocovirus, with four isolated but not classified phages. In addition, 14 uncultured viral genomes assembled from the marine metagenomes could provide additional support to establish this novel viral genus. This study reports the first podovirus infecting , establishes a new interaction system for the study of virus-host interactions, and also provides new reference genomes for the marine viral metagenomic analysis.

摘要

是海洋沉积物和深海中常见的细菌属,具有多种代谢能力,表明其在海洋生物地球化学循环中发挥着重要作用。在本研究中,从中国青岛近岸表层海水中分离出一种新型裂解性希瓦氏菌噬菌体vB_SInP-X14。vB_SInP-X14含有一条线性双链36396 bp的DNA,G + C含量为44.1%,并含有40个预测的开放阅读框。形态学、生长和基因组分析表明,它是首个分离得到的感染[具体细菌名称缺失]的短尾病毒,繁殖时间短(40分钟),这可能是由三个与裂解相关的基因导致的。系统发育分析表明,vB_SInP-X14可能代表一个新的病毒属,命名为博卡病毒属,与四个已分离但未分类的噬菌体同属该属。此外,从海洋宏基因组中组装的14个未培养病毒基因组可为建立这个新病毒属提供额外支持。本研究报道了首个感染[具体细菌名称缺失]的短尾病毒,建立了用于研究病毒-宿主相互作用的新系统,也为海洋病毒宏基因组分析提供了新的参考基因组。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4932/9011153/261abf3eca65/fmicb-13-853973-g001.jpg

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