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在海洋中培养新型且丰富的海洋噬菌体。

Culturing novel and abundant pelagiphages in the ocean.

机构信息

Fujian Provincial Key Laboratory of Agroecological Processing and Safety Monitoring, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China.

Institute of Marine and Environmental Technology, University of Maryland Center for Environmental Science, Baltimore, MD, USA.

出版信息

Environ Microbiol. 2021 Feb;23(2):1145-1161. doi: 10.1111/1462-2920.15272. Epub 2020 Oct 19.

Abstract

Viruses play a key role in biogeochemical cycling and host mortality, metabolism, physiology and evolution in the ocean. Viruses that infect the globally abundant SAR11 bacteria (pelagiphages) were reported to be an important component of the marine viral communities. Our current knowledge of pelagiphages is based on a few studies and therefore is limited. In this study, 10 new pelagiphages were isolated and genomically characterized. These pelagiphages represent the first cultivated representatives of four viral lineages only found in metagenomic sequencing datasets previously. Many abundant environmental viral sequences, i.e., single-virus vSAG 37-F6 and several Global Ocean Viromes (GOV) viral populations, are now further confirmed with these pelagiphages. Viromic read mapping reveals that these new pelagiphages are globally distributed in the ocean and can be detected throughout the water column. Remarkably, isolation of these pelagiphages contributed up to 12% of all viromic reads annotated in the analysed viromes. Altogether, this study has greatly broadened our understanding of pelagiphages regarding their morphology, genetic diversity, infection strategies, and distribution pattern. The availability of these newly isolated pelagiphages and their genome sequences will allow us to further explore their infectivities and ecological strategies.

摘要

病毒在海洋的生物地球化学循环、宿主死亡率、代谢、生理学和进化中起着关键作用。感染全球丰富的 SAR11 细菌(浮游噬菌体)的病毒被认为是海洋病毒群落的重要组成部分。我们目前对浮游噬菌体的了解基于少数几项研究,因此是有限的。在这项研究中,分离并基因组表征了 10 种新的浮游噬菌体。这些浮游噬菌体代表了先前在宏基因组测序数据集中仅发现的四个病毒谱系的第一批培养代表。许多丰富的环境病毒序列,即单病毒 vSAG 37-F6 和几个全球海洋病毒组(GOV)病毒群体,现在可以通过这些浮游噬菌体进一步证实。病毒组读数映射表明,这些新的浮游噬菌体在全球海洋中分布,并可在水柱中检测到。值得注意的是,这些浮游噬菌体的分离贡献了分析的病毒组中注释的所有病毒组读数的高达 12%。总的来说,这项研究极大地拓宽了我们对浮游噬菌体的理解,包括它们的形态、遗传多样性、感染策略和分布模式。这些新分离的浮游噬菌体及其基因组序列的可用性将使我们能够进一步探索它们的感染力和生态策略。

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