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EPHB2 作为鼻咽癌的复发相关基因和预后指标:生物信息学筛选和免疫组织化学验证。

EPHB2 as a recurrence-related gene and a prognostic indicator in nasopharyngeal carcinoma: A bioinformatics screening and immunohistochemistry verification.

机构信息

Department of Otolaryngology Head and Neck Surgery, Affiliated Hospital of Guizhou Medical University, Guiyang, China.

出版信息

Histol Histopathol. 2022 Sep;37(9):889-897. doi: 10.14670/HH-18-459. Epub 2022 Apr 20.

Abstract

Recurrence and metastasis of nasopharyngeal carcinoma (NPC) after radical treatment is a major bottleneck in clinical treatment. Therefore, we aimed to find the genes related to metastasis after radical treatment in NPC patients. Public datasets in the Gene Expression Omnibus database were consulted and the differential expression genes (DEGs) were screened out. The possible roles of the DEGs were annotated by Gene Ontology, and pathway analysis. The hub genes/proteins were then filtered out through protein-protein interaction network construction. The key genes were sifted out from the hub genes, and their expressions were verified by qPCR and immunohistochemistry assays. A total of 28 DEGs were filtered out, which may be enriched in different signaling pathways. Of these DEGs, 11 hub genes were filtered out, among which EPHB2 was shown to be over-expressed in NPC tissues. Further experimental assays confirmed that EPHB2 was overexpressed in NPC cells, which might be associated with tumor recurrence, neck lymph node metastasis, and advanced clinical stages. Moreover, high EPHB2 expression predicted poor prognosis in NPC patients. EPHB2 might be a novel recurrence-related biomarker and a prognostic factor for NPC. Moreover, it might also be used as a potential treatment target for NPC.

摘要

鼻咽癌(NPC)根治性治疗后复发和转移是临床治疗的一大瓶颈。因此,我们旨在寻找 NPC 患者根治性治疗后转移相关的基因。查阅基因表达综合数据库中的公共数据集,筛选出差异表达基因(DEGs)。通过基因本体论和通路分析注释 DEGs 的可能作用。通过构建蛋白质-蛋白质相互作用网络筛选出核心基因/蛋白。从核心基因中筛选出关键基因,并通过 qPCR 和免疫组织化学检测验证其表达。共筛选出 28 个 DEGs,可能富集在不同的信号通路中。在这些 DEGs 中,筛选出 11 个核心基因,其中 EphB2 在 NPC 组织中表达上调。进一步的实验证实 EphB2 在 NPC 细胞中高表达,可能与肿瘤复发、颈部淋巴结转移和临床晚期有关。此外,EPHB2 高表达预示 NPC 患者预后不良。EPHB2 可能是 NPC 复发相关的新型生物标志物和预后因素。此外,它也可能被用作 NPC 的潜在治疗靶点。

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